Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0375.Seq
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical pr... 33 0.099
Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical pr... 30 0.92
U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical p... 27 8.6
Z73972-10|CAA98263.2| 388|Caenorhabditis elegans Hypothetical p... 27 8.6
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 8.6
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 8.6
AL021474-8|CAA16310.2| 388|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical
protein C54G4.8 protein.
Length = 285
Score = 33.5 bits (73), Expect = 0.099
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 462 IKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVSKK*TP 340
+K + +A V+ Y KRH WS KS+K +K V + P
Sbjct: 242 LKIAALIPFVAVVLIYGKRHIWSFTKSQKFLFKTVKGREPP 282
>Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical
protein R08H2.10 protein.
Length = 130
Score = 30.3 bits (65), Expect = 0.92
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 81 DHLTLQFDCATASQWQNAINIIT 149
DH+TL FDCAT SQ + + +T
Sbjct: 26 DHVTLSFDCATTSQKKITLKNVT 48
>U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical
protein ZK1290.6 protein.
Length = 507
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 430 GKHGEHADSFDGHLXDGRPISGSEHHS 510
G HG H S+ GH GR S S S
Sbjct: 68 GGHGSHGGSYGGHSGHGRSFSTSSGSS 94
>Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 247 FYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 155
F L S V + GG L LC+ WSR ++ L
Sbjct: 9 FVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 247 FYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 155
F L S V + GG L LC+ WSR ++ L
Sbjct: 9 FVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>Z73972-10|CAA98263.2| 388|Caenorhabditis elegans Hypothetical
protein F15H10.4 protein.
Length = 388
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 290 IGTVTC*LFIIK*FILSTIACLLCYTGWLAVTLLPCVVP*TRNRIILC 147
IG + C F I + ++ L Y G+LA+ +PC + R LC
Sbjct: 212 IGIIVCVPFAIGSIVSGSVLMFL-YMGFLAIRTIPCGLSGDRVGTFLC 258
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SFHGKSQAQLPTDHLTLQFDCATASQW-QNAINIIT 149
SF+G S+ T + L C+++ QW +N I + T
Sbjct: 2141 SFNGGSRTMSGTGQIVLTMTCSSSGQWMRNGIGVET 2176
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SFHGKSQAQLPTDHLTLQFDCATASQW-QNAINIIT 149
SF+G S+ T + L C+++ QW +N I + T
Sbjct: 2141 SFNGGSRTMSGTGQIVLTMTCSSSGQWMRNGIGVET 2176
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SFHGKSQAQLPTDHLTLQFDCATASQW-QNAINIIT 149
SF+G S+ T + L C+++ QW +N I + T
Sbjct: 2141 SFNGGSRTMSGTGQIVLTMTCSSSGQWMRNGIGVET 2176
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SFHGKSQAQLPTDHLTLQFDCATASQW-QNAINIIT 149
SF+G S+ T + L C+++ QW +N I + T
Sbjct: 2141 SFNGGSRTMSGTGQIVLTMTCSSSGQWMRNGIGVET 2176
>AL021474-8|CAA16310.2| 388|Caenorhabditis elegans Hypothetical
protein F15H10.4 protein.
Length = 388
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 290 IGTVTC*LFIIK*FILSTIACLLCYTGWLAVTLLPCVVP*TRNRIILC 147
IG + C F I + ++ L Y G+LA+ +PC + R LC
Sbjct: 212 IGIIVCVPFAIGSIVSGSVLMFL-YMGFLAIRTIPCGLSGDRVGTFLC 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,040
Number of Sequences: 27780
Number of extensions: 225199
Number of successful extensions: 519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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