Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0375.Seq
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1, ...    33   0.091
At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1, ...    33   0.091
At1g80870.1 68414.m09489 protein kinase family protein contains ...    28   4.5  

>At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           M  K I + S+      YY+R KWS LKSRKL    V+
Sbjct: 270 MGFKWIFLLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307


>At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           M  K I + S+      YY+R KWS LKSRKL    V+
Sbjct: 270 MGFKWIFLLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307


>At1g80870.1 68414.m09489 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 692

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 342 PTTYK*QNKCFRQIFFFYRHSNMLIVYN*IIYFIYHRVFTLLH 214
           PT  K  +   + +F     S+ L+++  I+YFIYH   +LL+
Sbjct: 7   PTRPKLFHNRTKTLFLILTISSSLVIFFAILYFIYHLWISLLN 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,607,858
Number of Sequences: 28952
Number of extensions: 197515
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)