Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0372.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   9.4  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 119 LMTAALCSTARNMDLSTLGGRFRLRS 42
           L T    S  ++ D+S+   RFRLRS
Sbjct: 40  LKTTQSVSVTKDQDVSSSVNRFRLRS 65


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock
          protein 90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 89 RNMDLSTLGGRFRLRSSMYNLINTFYS*K 3
          +N D+ T   +  +   M  +INTFYS K
Sbjct: 6  QNGDVETFAFQAEIAQLMSLIINTFYSNK 34


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 120  ANDGCIVQYRPEHGPLDAW 64
            A +G I  Y+  +GP D W
Sbjct: 1128 AANGVIKGYKVIYGPSDTW 1146


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 251 RSSRLCAVPSSSSP 210
           RSSR+C   SS  P
Sbjct: 149 RSSRMCFFKSSKKP 162


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 251 RSSRLCAVPSSSSP 210
           RSSR+C   SS  P
Sbjct: 149 RSSRMCFFKSSKKP 162


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 251 RSSRLCAVPSSSSP 210
           RSSR+C   SS  P
Sbjct: 149 RSSRMCFFKSSKKP 162


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 251 RSSRLCAVPSSSSP 210
           RSSR+C   SS  P
Sbjct: 149 RSSRMCFFKSSKKP 162


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 224 SSSSPDVKRSTYQRSGVSQSMNVMSLRS 141
           S+SSP +  +TY  S  S   +  S+ S
Sbjct: 199 STSSPTIASATYTNSANSSIWSPASIDS 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,622
Number of Sequences: 336
Number of extensions: 2137
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)