Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0372.Seq
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 82 3e-17
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 82 4e-17
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.33
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.33
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.33
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.33
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 2.3
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 3.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.1
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 4.1
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 24 9.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 82.2 bits (194), Expect = 3e-17
Identities = 47/79 (59%), Positives = 53/79 (67%)
Frame = -1
Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSDRWKHRSSRLCAVP 225
V+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D SSR A+
Sbjct: 96 VVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKD-----SSRATAIE 150
Query: 224 SSSSPDVKRSTYQRSGVSQ 168
+ K QR VS+
Sbjct: 151 ALRRCQYKFPGQQRIIVSK 169
Score = 73.7 bits (173), Expect = 1e-14
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = -3
Query: 255 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGP 76
A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++ + G
Sbjct: 146 ATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGS 205
Query: 75 L 73
L
Sbjct: 206 L 206
Score = 31.5 bits (68), Expect = 0.062
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 447 KDQFHIRIRLHPFH 406
KD FH+R+R HPFH
Sbjct: 82 KDSFHLRVRAHPFH 95
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 81.8 bits (193), Expect = 4e-17
Identities = 47/79 (59%), Positives = 53/79 (67%)
Frame = -1
Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSDRWKHRSSRLCAVP 225
V+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D SSR A+
Sbjct: 96 VVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKD-----SSRATAIE 150
Query: 224 SSSSPDVKRSTYQRSGVSQ 168
+ K QR VS+
Sbjct: 151 ALRRCQYKFPGQQRIIVSK 169
Score = 73.7 bits (173), Expect = 1e-14
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = -3
Query: 255 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGP 76
A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++ + G
Sbjct: 146 ATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGS 205
Query: 75 L 73
L
Sbjct: 206 L 206
Score = 31.5 bits (68), Expect = 0.062
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 447 KDQFHIRIRLHPFH 406
KD FH+R+R HPFH
Sbjct: 82 KDSFHLRVRAHPFH 95
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 118 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 252
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 118 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 252
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 118 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 252
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 118 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 252
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 238 SLDDLCFHLSLERTDMMGCPMRTRATXP 321
S +LC + L+RT++ C TR+T P
Sbjct: 499 STPNLCDQVWLDRTNLFPCNRSTRSTLP 526
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -1
Query: 236 CAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 120
C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 31 CVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 318 TLRLAKRTTHPSLEPISSS 374
T +LAKR T PSL P S+
Sbjct: 958 TTKLAKRITQPSLSPARST 976
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 248 SSRLCAVPSSSSPDVKRSTYQRSGVS 171
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 355 RLGCVVRLASLRVL*HVFALDSPSCPCALVTGGSTGHRGSA 233
R+GC + + L ++ +V L CP AL+ ++ G A
Sbjct: 252 RIGCEIEASVLFIMGNVLFLCEMECPGALIRTRNSIRNGIA 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,614
Number of Sequences: 5004
Number of extensions: 36304
Number of successful extensions: 95
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -