Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0372.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 83 1e-16
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 81 3e-16
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 79 1e-15
06_02_0084 - 11547820-11548773 29 1.3
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 2.3
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 3.0
07_03_1509 - 27246721-27247350 28 3.0
02_01_0254 - 1669461-1669590,1669833-1672318 28 4.0
07_03_0604 + 19903654-19904598 27 5.3
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 7.0
09_03_0192 + 13344558-13344942,13345038-13345591 27 7.0
06_02_0263 - 13566621-13569875 27 7.0
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 27 7.0
10_08_1058 + 22608852-22609172,22609257-22610651 27 9.2
08_02_0451 + 17297293-17297793,17297866-17298130,17298215-172984... 27 9.2
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 27 9.2
02_02_0371 - 9513742-9514293,9514784-9514923,9515217-9515556,951... 27 9.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 82.6 bits (195), Expect = 1e-16
Identities = 50/126 (39%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Frame = -3
Query: 447 KDQFHIRIRLHPFHGXPHQ*NVIMRWS**APDWDAWCVWQASGXCSTCS-HWTAHHVRAL 271
KD FH+R+R+HPFH + + + G C+ VR
Sbjct: 82 KDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCK 141
Query: 270 **QVEAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYR 91
+ EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q
Sbjct: 142 ESNAK-HAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLL 200
Query: 90 PEHGPL 73
HG L
Sbjct: 201 GSHGRL 206
Score = 80.2 bits (189), Expect = 7e-16
Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Frame = -1
Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSD-RWKHRSSRL 237
V+RINKMLSCAGADRLQTGMRGAFGKPQG ARV IGQ ++SVR + KH L
Sbjct: 96 VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEAL 152
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 81.4 bits (192), Expect = 3e-16
Identities = 38/47 (80%), Positives = 41/47 (87%)
Frame = -1
Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSD 264
V+RINKMLSCAGADRLQTGMRGAFGKP G ARVRIGQ ++SVR D
Sbjct: 403 VLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRD 449
Score = 76.6 bits (180), Expect = 9e-15
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = -3
Query: 255 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 79
A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 453 AHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = -1
Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVR 273
V+RINKMLSCAGADRLQTGMRGAFGKPQG ARV IGQ ++SVR
Sbjct: 92 VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVR 135
Score = 78.6 bits (185), Expect = 2e-15
Identities = 44/113 (38%), Positives = 57/113 (50%)
Frame = -3
Query: 447 KDQFHIRIRLHPFHGXPHQ*NVIMRWS**APDWDAWCVWQASGXCSTCSHWTAHHVRAL* 268
KD FH+R+R+HPFH + + + G C+
Sbjct: 78 KDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCK 137
Query: 267 *QVEAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 109
EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 138 PNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>06_02_0084 - 11547820-11548773
Length = 317
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 383 LSCAGADRLQTGMRGAFGK--PQGXVARVRIGQPIMSVRSSDRWKHR 249
L G DR Q GMRGA P RVR +P R +W+ R
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWRRR 179
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 2.3
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 286 MGCPMRTRATXP*GLPNAPRIPVWSLSAPAH 378
+ CP+ + + P LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +1
Query: 28 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 153
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>07_03_1509 - 27246721-27247350
Length = 209
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = -1
Query: 302 RIGQPIMSVRSSDRWKHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 171
R+ P+ S+ R +H RL +P +SSSP+++R+T R+G S
Sbjct: 131 RLQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 19 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 150
V +RL++ S PPS + F A + AA +AAL LL+
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67
>07_03_0604 + 19903654-19904598
Length = 314
Score = 27.5 bits (58), Expect = 5.3
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Frame = +3
Query: 87 PGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLI----RRSFDVRGT*TWHGAEPR*PV 254
PGG + R G P+H A + HH + RR RG G PR P
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGE-EGQGRRPRVPA 138
Query: 255 ---LPPVTRAHGH 284
L RAHGH
Sbjct: 139 GAQLRRRRRAHGH 151
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 204 QKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPE 85
+KIY S WGFT E++ + +E + I + +PE
Sbjct: 2 EKIYRSHLWGFTANEKEAYSGENDERQQILQLIIEEKQPE 41
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 27.1 bits (57), Expect = 7.0
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -3
Query: 234 RRAKFKFPGRQKIY----VSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 67
R A+ ++P +Y +++K F +D LR+ A D + Y+ GPLDA
Sbjct: 92 RLARSEYPKHHYVYPMAGLNEKVDFLCKAKDLMHHLRKSK--ATDWALGPYKSVFGPLDA 149
Query: 66 WRKVQAEILNV 34
+ EIL+V
Sbjct: 150 QTQDGMEILDV 160
>06_02_0263 - 13566621-13569875
Length = 1084
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Frame = -1
Query: 374 AGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSDRWKHRSSRLCAV------PSSSS 213
A A R +TG+ G +PI + S +RW+ + V P+
Sbjct: 228 AAATRRRTGVSGIVIPEDNQTGTASSRRPIRRMSSPERWEMKQLIASGVLNAKDYPAFDD 287
Query: 212 PDVKRSTYQRSGVSQSMNV 156
D + YQ GV + + +
Sbjct: 288 EDSEGMNYQEEGVEEELEI 306
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 371 GADRLQTGMRGAF--GKPQGXVARVRIGQPIMSVRSSDRWKHR 249
G D + G RGA G+P RVR +P R RW+ R
Sbjct: 92 GGDGGRLGARGAADGGRPDWRERRVRWRRPAWRERRGRRWRRR 134
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 143 SCVKRAASL--MTAALCSTARNMDLSTLGGRFRL 48
+CV AASL MT MD GGRFR+
Sbjct: 343 TCVLYAASLGQMTTTFIQQGMAMDTRVFGGRFRV 376
>08_02_0451 +
17297293-17297793,17297866-17298130,17298215-17298410,
17298437-17298864,17298923-17299200,17299298-17299588
Length = 652
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 143 SCVKRAASLMTAALCSTARNMDLSTLGGRFRLRS 42
S +KR A + AA CST R M G + RLR+
Sbjct: 548 SAIKRLAVRILAAHCSTERTMRACLDGFKNRLRA 581
>02_05_0902 + 32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 407 TVIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSS 267
+V R +LSC G G+ +PQ AR + I S+RSS
Sbjct: 864 SVDRAIHVLSCLGDKAKYASFDGSISRPQVLKARQGFKEQIRSLRSS 910
>02_02_0371 -
9513742-9514293,9514784-9514923,9515217-9515556,
9515659-9515721,9515812-9515910,9516016-9516126,
9517114-9517257
Length = 482
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = -3
Query: 336 VWQA--SGXCSTCSHWTAHH 283
VW A SG CSTC+ +HH
Sbjct: 128 VWHALQSGDCSTCTESCSHH 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,491
Number of Sequences: 37544
Number of extensions: 288142
Number of successful extensions: 824
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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