Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0372.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 48 4e-06
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 29 1.8
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 3.1
SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10) 28 4.1
SB_42511| Best HMM Match : Ala_racemase_N (HMM E-Value=2.7) 28 4.1
SB_37914| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 27 5.4
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11) 27 5.4
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03) 27 7.2
SB_30384| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15) 27 9.5
SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = -1
Query: 347 MRGAFGKPQGXVARVRIGQPIMSVRSSD 264
MRGAFGKPQG VARV IGQ I+S+R+ D
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKD 28
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -3
Query: 258 EAQVIEALRRAKFKFPGRQK 199
+A IEALRRAKFKFPGRQK
Sbjct: 31 KAAAIEALRRAKFKFPGRQK 50
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = +3
Query: 69 RREVHVPGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLIRRSFDVRGT*TWHGAEPR* 248
+R++HV G + + H GG L Q H + NP++ + T A
Sbjct: 10 KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPI-- 66
Query: 249 PVLPPVTRAHGHDGLSNANTC 311
P + A +DGLSNAN C
Sbjct: 67 PTQTSRSVALAYDGLSNANVC 87
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 339 CVWQASGXCSTCSHWTAHHV 280
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)
Length = 315
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 10 E*NVLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILC 171
E +V +RL++E + L++P + + R VLH + +S+ L LIT ++C
Sbjct: 97 ESDVSMRLFLEVI-LSVPFLISNDLHRLVLHQQSALSQKVLI-----LITTVVC 144
>SB_42511| Best HMM Match : Ala_racemase_N (HMM E-Value=2.7)
Length = 228
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 307 VFALDSPSCPCALVTGGSTG 248
V AL S + PC +VTGG TG
Sbjct: 113 VEALSSNNIPCEVVTGGGTG 132
>SB_37914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 4.1
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = -1
Query: 323 QGXVARVRIGQPIMSVRSSDRWKHRSSRLCAVPSSSSPDVKRSTYQRSG---VSQSMNVM 153
+G +A+V +P+ S+ R K +S RLC P + + R Y+ +S ++N
Sbjct: 96 KGVIAKVN--EPVDWQPSNRRKKDKSLRLCLDPPDLNAAMLREDYKPPSIKKISSTLNGC 153
Query: 152 SLRSCVKRAASLMTAALCSTARNM-DLSTLGGRFRLRSSMYNLI 24
+ + V ++ L A + +T GRFR R + ++
Sbjct: 154 KVFTVVDMSSCYWHKKLTDAASLLCTFNTPFGRFRFRRVPFGIL 197
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 192 VSKKWGFTKYE---RDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 64
V K W T +E + LR R D CI+ Y+ ++GPL W
Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433
>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
Length = 813
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = -1
Query: 401 IRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSDRWKHRSSRLCAVPS 222
+++N +L+CAGAD ++ F + + + + + S + S LC +
Sbjct: 429 LKVNLLLNCAGADAIEEYSHFVFNEGESNESYEDVCRKFKGTLSGSKETSSMSALCLIKE 488
Query: 221 SSSPDVKR---STYQRSGVSQSM 162
+ K ST ++ +SM
Sbjct: 489 TRKEGKKETPVSTVEQENQVESM 511
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 27.5 bits (58), Expect = 5.4
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 214 ELELGTAQSLDDLCFHLSLERTDMMGCPMRTRATXP*GLPNAPRIPVWSLSAPAHDNILL 393
EL+ T Q++ D H+SL + + CP P PNA R+ + H ++
Sbjct: 1561 ELKTVTIQNISDQTVHVSLMNANHILCPYTDGPPWP--FPNAERVEGTGTTGYPHGRHVI 1618
Query: 394 MRXTVER 414
ER
Sbjct: 1619 RTLCPER 1625
>SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)
Length = 1020
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -1
Query: 272 SSDRWKHRSSRLCAVPSSSSPDVKRSTYQRSGVSQ---SMNVMSLRSCVKRAASLMTAAL 102
+S++ +HRSS++C + S+ +K + +G + S+ + L C+ +T+ L
Sbjct: 3 ASNKQRHRSSKVCEIYSNYPVAIKVQAFGTNGCNALVFSVALSDLGLCLLYMPVSLTSLL 62
Query: 101 C 99
C
Sbjct: 63 C 63
>SB_30384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -1
Query: 329 KPQGXVARVRIGQPIMSVRSSDRWKHRSSRLCAVPSSSSPDVKRSTYQRSGVSQ 168
+P V R R G P++ R RW S + +S + ++R ++ GV+Q
Sbjct: 80 RPSPLVRRNRPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQ 133
>SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1419
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 335 FGKPQGXVARVRIGQPIMSVRSSDRWKHRSSRLCAVPSSSSPDVKRS 195
+ KP G VA RI V+ +D H S L +SP++K S
Sbjct: 670 YKKPPGDVASYRIVVHTNDVKDADTRAHVSCVLYGDRGKTSPEIKLS 716
>SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)
Length = 783
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 347 MRGAFGKPQGXVARVRI-GQPIMSVRSSDRWKHRSSRLCAVPSSSSPDVKRSTYQRSGVS 171
+R AF KP+ + + G P++ R RW S + +S + ++R ++ GV+
Sbjct: 512 IRDAFDKPREIIIVMEYPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVT 571
Query: 170 Q 168
Q
Sbjct: 572 Q 572
>SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 55 NLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*Y 192
++PP E + LHN A+++ TQ L +L E L Y
Sbjct: 195 DMPPRAEEELDAVSLHNQALMNMETAPTQYYDLAADVLAENAQLTY 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,903,653
Number of Sequences: 59808
Number of extensions: 312999
Number of successful extensions: 2389
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2389
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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