Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0372.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...    91   3e-19
Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    32   0.22 
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      32   0.22 
AF077530-4|AAC26267.1|  147|Caenorhabditis elegans Hypothetical ...    29   1.6  
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical...    29   2.1  
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    29   2.1  
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    29   2.1  
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical...    29   2.1  
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    29   2.1  
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score = 91.1 bits (216), Expect = 3e-19
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = -3

Query: 246 IEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 67
           IEA RRAKFKFPGRQ I  S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL  
Sbjct: 149 IEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208

Query: 66  W 64
           W
Sbjct: 209 W 209



 Score = 74.5 bits (175), Expect = 3e-14
 Identities = 35/44 (79%), Positives = 38/44 (86%)
 Frame = -1

Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVR 273
           V RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R
Sbjct: 96  VTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMR 139



 Score = 30.3 bits (65), Expect = 0.68
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 447 KDQFHIRIRLHPFH 406
           KD FH+R+R HPFH
Sbjct: 82  KDGFHLRVRKHPFH 95


>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 278 RT*WAVQCEHVLQXPEACQTHHASQSGAYQLQRMITFY*CGXPWKG 415
           RT     C+ ++Q PE CQ   A Q     L  + TF   G PW G
Sbjct: 47  RTPGCAACQTIIQ-PELCQHDRAKQKQILALPVVCTFESSGCPWDG 91


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 278 RT*WAVQCEHVLQXPEACQTHHASQSGAYQLQRMITFY*CGXPWKG 415
           RT     C+ ++Q PE CQ   A Q     L  + TF   G PW G
Sbjct: 47  RTPGCAACQTIIQ-PELCQHDRAKQKQILALPVVCTFESSGCPWDG 91


>AF077530-4|AAC26267.1|  147|Caenorhabditis elegans Hypothetical
           protein C40D2.4 protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 186 LIRRSFDVRGT*TWHGAEPR*PVLPPVTRAHGHDGLSNANTCYXTLRLAKRTTHPSLEPI 365
           +I+R F++R   T    EP   +LP        +  +N N C  TL   +  TH  ++ I
Sbjct: 43  IIQRWFEIRRAPTQESWEPE-VILPEAIAIFEKEFTTNPNPCSHTLEELRMKTHVQVDSI 101

Query: 366 S 368
           +
Sbjct: 102 N 102


>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 262  LSLERTDMMGCPMRTRATXP*GLPNAPRIPVWSLSAPAHDNILLMRXTVERVKSYADME 438
            L++E TD++G P RT+A       N+  IP         D++     T   V  +A+ME
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIPRKESDQNLADSLRTRCSTSSAVMIHANME 1020


>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 262  LSLERTDMMGCPMRTRATXP*GLPNAPRIPVWSLSAPAHDNILLMRXTVERVKSYADME 438
            L++E TD++G P RT+A       N+  IP         D++     T   V  +A+ME
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIPRKESDQNLADSLRTRCSTSSAVMIHANME 1020


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 262  LSLERTDMMGCPMRTRATXP*GLPNAPRIPVWSLSAPAHDNILLMRXTVERVKSYADME 438
            L++E TD++G P RT+A       N+  IP         D++     T   V  +A+ME
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIPRKESDQNLADSLRTRCSTSSAVMIHANME 1020


>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 262  LSLERTDMMGCPMRTRATXP*GLPNAPRIPVWSLSAPAHDNILLMRXTVERVKSYADME 438
            L++E TD++G P RT+A       N+  IP         D++     T   V  +A+ME
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIPRKESDQNLADSLRTRCSTSSAVMIHANME 1020


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 262  LSLERTDMMGCPMRTRATXP*GLPNAPRIPVWSLSAPAHDNILLMRXTVERVKSYADME 438
            L++E TD++G P RT+A       N+  IP         D++     T   V  +A+ME
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIPRKESDQNLADSLRTRCSTSSAVMIHANME 1020


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 262  LSLERTDMMGCPMRTRATXP*GLPNAPRIPVWSLSAPAHDNILLMRXTVERVKSYADME 438
            L++E TD++G P RT+A       N+  IP         D++     T   V  +A+ME
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIPRKESDQNLADSLRTRCSTSSAVMIHANME 1020


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 325 GLPNAPRIPVWSLSAPA 375
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 174 FTKYERDEFEKLREEGRLANDGCIVQYR 91
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


>Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical
           protein F36A2.4 protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 261 VEAQVIEALRRAKF-KFPGRQKIYVSKKWGFTKYERDEFEKLRE 133
           +E + ++AL++    K     K YV K W   K +RD+++ + +
Sbjct: 39  LEGEHLDALKKDHMAKIEQNAKDYVDKLWSVAKRDRDKYKNVED 82


>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -3

Query: 213 PGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAWRKVQAEILNV 34
           P R  +    +W F +Y   +FE  +      ND  IV+  P +G  D    +  +++  
Sbjct: 123 PERDPVVFKPQWPFPEYCASKFEAEKLVKSAPNDCYIVRCVPTYGEGDDC-SILTDLIYF 181

Query: 33  *SDQYILLL 7
            +D+ IL L
Sbjct: 182 SNDKTILFL 190


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 255 LPPVTRAHGHDGLSNANTCYXTLRLAKRTTHPSLEPISSSA 377
           +P VT A   + LSN  T   T  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,847,885
Number of Sequences: 27780
Number of extensions: 222347
Number of successful extensions: 595
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)