Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0372.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   0.67 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 225 WHGAEPR*PVLPPVTRAHGHD 287
           W  A  R  +LP +  A+GHD
Sbjct: 221 WKSARTRFDILPLILSANGHD 241


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 167 SMNVMSLRSCVKRAASLMTAALCSTARNMD 78
           ++N+++   C K   ++M  A+C+ A+  D
Sbjct: 314 TLNMLTQVECYKYYGNIMVNAMCAYAKGKD 343


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 22  LIRLYIEDLSLNLPPSVERSMFR 90
           LIRL + +LS N+   ++  MF+
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFK 356


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 250 LCFHLSLERTDMMGCPMR 303
           LC  ++L + D+MG P R
Sbjct: 203 LCPGMALSQFDLMGSPYR 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,908
Number of Sequences: 438
Number of extensions: 2320
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)