Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0372.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...    86   1e-17
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...    86   1e-17
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...    85   2e-17
At4g31570.1 68417.m04483 expressed protein                             27   4.4  
At4g13965.1 68417.m02160 F-box family protein contains F-box dom...    27   4.4  
At1g07490.1 68414.m00802 expressed protein                             27   4.4  
At5g13030.1 68418.m01494 expressed protein contains Pfam profile...    27   5.9  
At4g26370.2 68417.m03792 antitermination NusB domain-containing ...    27   5.9  
At4g26370.1 68417.m03791 antitermination NusB domain-containing ...    27   5.9  
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic...    27   5.9  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    27   7.7  
At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger) fa...    27   7.7  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 55/127 (43%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
 Frame = -3

Query: 447 KDQFHIRIRLHPFHGXPHQ*NVIMRWS**APDWDAWCVWQASGXCSTCS-HWTAHHVRAL 271
           KD FH+RIR+HPFH       +    +            +A G C+  +       VR  
Sbjct: 82  KDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCK 141

Query: 270 **Q-VEAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 94
               V AQ  EALRRAKFKFPGRQKI VS+KWGFTK+ R E+ KLR   R+  DG   ++
Sbjct: 142 DNHGVHAQ--EALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKF 199

Query: 93  RPEHGPL 73
              HGPL
Sbjct: 200 LSNHGPL 206



 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 36/47 (76%), Positives = 39/47 (82%)
 Frame = -1

Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSD 264
           V+RINKMLSCAGADRLQTGMRGAFGK  G  ARV IGQ ++SVR  D
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKD 142


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 56/129 (43%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
 Frame = -3

Query: 447 KDQFHIRIRLHPFHGXPHQ*NVIMRWS**APDWDAWCVWQASGXC-STCSHWTAHHVRAL 271
           KD FH+RIR+HPFH    + N ++  +    D     +  A G    TC+      V   
Sbjct: 82  KDAFHLRIRVHPFHVL--RINKMLSCA--GADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 270 **QVEAQ---VIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 100
               +A      EALRRAKFKFPGRQKI VS+KWGFTK+ R +F KLR+E R+  DG   
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNA 197

Query: 99  QYRPEHGPL 73
           ++   HGPL
Sbjct: 198 KFLSCHGPL 206



 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 37/53 (69%), Positives = 41/53 (77%)
 Frame = -1

Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSDRWKHRS 246
           V+RINKMLSCAGADRLQTGMRGAFGK  G  ARV IGQ ++SVR  D   H +
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHA 148


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 55/129 (42%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
 Frame = -3

Query: 447 KDQFHIRIRLHPFHGXPHQ*NVIMRWS**APDWDAWCVWQASGXC-STCSHWTAHHVRAL 271
           KD FH+RIR+HPFH    + N ++  +    D     +  A G    TC+      V   
Sbjct: 82  KDAFHLRIRVHPFHVL--RINKMLSCA--GADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 270 **QVEAQ---VIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 100
               +A      EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ KLR+E R+  DG   
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNA 197

Query: 99  QYRPEHGPL 73
           ++   HGPL
Sbjct: 198 KFLSCHGPL 206



 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 37/53 (69%), Positives = 41/53 (77%)
 Frame = -1

Query: 404 VIRINKMLSCAGADRLQTGMRGAFGKPQGXVARVRIGQPIMSVRSSDRWKHRS 246
           V+RINKMLSCAGADRLQTGMRGAFGK  G  ARV IGQ ++SVR  D   H +
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHA 148


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 295 DSPSCPCALVTGGSTGHRGSAPCQVQVPRTSKDLRIKE 182
           D    P  +  GG+T H   A   V  P+TS D +  E
Sbjct: 66  DEAQAPSPVTVGGATSHVNVAEEVVDSPQTSSDTKAHE 103


>At4g13965.1 68417.m02160 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 294

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -1

Query: 215 SPDVKRSTYQ-RSGVSQSMN-VMSLRSCVK-RAASLMTAALCSTARNMDLSTLGGRFRLR 45
           S +VKR+    ++ V  S++ ++ L  C     A L+  A     R + L   GGRF + 
Sbjct: 71  SKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKLIGIAFACNLRKLVLEVDGGRFSIP 130

Query: 44  SSMYN 30
            S+YN
Sbjct: 131 ESLYN 135


>At1g07490.1 68414.m00802 expressed protein 
          Length = 107

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 248 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 147
           SS  C+VPSSSS  + RS+ ++   S +    SL
Sbjct: 48  SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81


>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
           PF02696: Uncharacterized ACR, YdiU/UPF0061 family
          Length = 633

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 240 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 139
           A+ R   KF    +  +SKK G TKY ++   KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488


>At4g26370.2 68417.m03792 antitermination NusB domain-containing
           protein contains Pfam profile: PF01029 NusB family
          Length = 248

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 248 SSRLCAVPSSSSPDVKRST-YQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARN 84
           SS LC   S+ SPD  RS  +      +  N++SLR+  KR++S       S  R+
Sbjct: 13  SSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRS 68


>At4g26370.1 68417.m03791 antitermination NusB domain-containing
           protein contains Pfam profile: PF01029 NusB family
          Length = 301

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 248 SSRLCAVPSSSSPDVKRST-YQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARN 84
           SS LC   S+ SPD  RS  +      +  N++SLR+  KR++S       S  R+
Sbjct: 13  SSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRS 68


>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
           to wall-associated kinase 2 [Arabidopsis thaliana]
           GI:4826399; induced by salicylic acid or INA
           (PMID:10380805)
          Length = 732

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 283 CPCALVTGGSTGHRGSAPCQVQVPRTSKDLRIKEVGFH 170
           C  A    GS    G   CQ+ VPR    +R+K   FH
Sbjct: 147 CDSATTKNGSCSGEGC--CQIPVPRGYSFVRVKPHSFH 182


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 40  EDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETP 180
           ED   ++P   E S+ RA+L +  + S  ++  ++ KLI     ETP
Sbjct: 680 EDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETP 726


>At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 167

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 263 RWKHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMT--AALC 99
           R++ RSS   +  SSSSP +   T     + +S+ V + R  V+R+ + +    A+C
Sbjct: 35  RYRSRSSSSSSSQSSSSPSISSQT-----IKESLAVSAFRDAVERSPAAINDMCAVC 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,630
Number of Sequences: 28952
Number of extensions: 206163
Number of successful extensions: 620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)