Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0371.Seq
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   2.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   3.8  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   6.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.6  

>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 283 LALHFFSSILFPLGCKSVKNIICDLQQCACFIQNFICNPYHLQPY*SCFL 432
           L  +F S   F L C +V  ++C +QQC+  + +F C  + L  Y +C L
Sbjct: 17  LQRYFHSFHCFFLLCFTV--MLCVVQQCSSAMTSFRCPTFSLSKY-TCVL 63


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 386 KFWIKHAHCCRSH 348
           +F ++H HCCR H
Sbjct: 64  RFIVRHIHCCRCH 76


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 328 KSVKNIICDLQQCACFIQNFICNPYHLQPY 417
           K+VK  ICD         + ICNP  L PY
Sbjct: 508 KTVKEAICDYNSDTSRTWD-ICNPNKLHPY 536


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 536 WQTLVNDFNCLFVVS 492
           W+T +N FNCL + S
Sbjct: 333 WKTFINTFNCLPIAS 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,545
Number of Sequences: 5004
Number of extensions: 39329
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)