Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0371.Seq
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026...    29   2.2  
05_06_0183 - 26182481-26182897,26183005-26183163,26183261-261837...    28   5.2  
07_02_0017 + 11816603-11816677,11816869-11817026,11817121-11817217     28   6.8  
04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947     28   6.8  
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153...    27   9.0  

>05_06_0185 -
           26201013-26201429,26201537-26201695,26201774-26202601,
           26203483-26203605
          Length = 508

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +2

Query: 320 LAVKVLKIL-YVTYNNVHALSKISSAILTTXNLTKVVSY-----VAVAFFKFSH 463
           LAVK L+I  +  YNNVH  S   S+I+ T     + S+       VA FKF H
Sbjct: 277 LAVKKLRISSFYQYNNVHYASANLSSIVPTIETLIISSFGEKFNTVVAPFKFLH 330


>05_06_0183 -
           26182481-26182897,26183005-26183163,26183261-26183714,
           26184370-26184485
          Length = 381

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +2

Query: 320 LAVKVLKIL-YVTYNNVHALSKISSAILTTXNLTKVVSY-----VAVAFFKFSH 463
           LAVK L I  +  YNNVH  S   S+I+ T     + S+       VA FKF H
Sbjct: 150 LAVKKLHISSFYRYNNVHYASANLSSIVPTIETLIISSFGEEVNTVVAPFKFLH 203


>07_02_0017 + 11816603-11816677,11816869-11817026,11817121-11817217
          Length = 109

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 223 YFPSQVSFLLLIFC*CIVPMLALHFFSS 306
           +F  +++FLLL F  C   ML+L FFSS
Sbjct: 29  WFVLKITFLLLAF--CFTAMLSLAFFSS 54


>04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947
          Length = 417

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 283 LALHFFSSILFPLGCKSVKNI-ICDLQQCACFIQNF 387
           LAL FF+ ++  +G  S+ N+ +C L  CAC+++ F
Sbjct: 344 LALPFFADLMALVG--SMLNVAVCMLLPCACYVRIF 377


>08_02_0433 -
           17114880-17114972,17115053-17115149,17115244-17115306,
           17115765-17115918,17115992-17116178,17116567-17116871,
           17117638-17117803,17118261-17118652,17119032-17119208,
           17119565-17119604,17119762-17119809,17122393-17122428,
           17122832-17123104
          Length = 676

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 97  FFKCMYKF*IKYLACT-NYHVIIILENIK*SNY 2
           F++C Y F + YL  T + H ++ L N+K   Y
Sbjct: 213 FYECCYAFVVSYLLATIHSHGLLNLNNVKVPEY 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,516,178
Number of Sequences: 37544
Number of extensions: 231923
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)