Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0371.Seq
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35921| Best HMM Match : Myelin_PLP (HMM E-Value=8.5)                30   1.3  
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          29   2.3  

>SB_35921| Best HMM Match : Myelin_PLP (HMM E-Value=8.5)
          Length = 201

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 421 SCFLCCRSVL*VFPF*SKLRWSSWETTNRQLKSFTRVCQACSFNLLXVAFWXLI 582
           S  +C RSV  ++ F    R+ S +T  R L +F RVC+  S  +  +  W  +
Sbjct: 91  SVAICQRSVRWLYAFKRVCRFVSRQTFMRYLYAFKRVCRFVSRQVGKICHWRFV 144


>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 293 ISFLPSCFRLAVKVLKILYVTYNNVHALSKISSAILTTXNLTKVVSYVAVAF 448
           IS + S FR++  V+ +  ++++    ++ ISS I+ T + + V S V V+F
Sbjct: 69  ISIVTSIFRISSSVISVFTLSFSVTLVVTVISSVIVVTIS-SSVTSVVKVSF 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,018,598
Number of Sequences: 59808
Number of extensions: 271579
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)