Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0371.Seq
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.34 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.34 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.3  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   9.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 617 RTLWPAKKTFPIIXHQNATXNKLKEQAWQTLVNDFNCL 504
           RT W A     I   Q     +L E+  + LVN  NCL
Sbjct: 390 RTEWSATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCL 427


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 617 RTLWPAKKTFPIIXHQNATXNKLKEQAWQTLVNDFNCL 504
           RT W A     I   Q     +L E+  + LVN  NCL
Sbjct: 428 RTEWSATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCL 465


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 508 VYSSFPTNSIAASTKMGKLKERYG 437
           +Y  FP  +  + TK+ ++++ YG
Sbjct: 362 LYEIFPARAPNSETKLAEMRDNYG 385


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 341 FLTLLQPSGNKMEEKKCKASI 279
           F   LQP  N +E+K  K+S+
Sbjct: 531 FPITLQPGKNTIEQKSTKSSV 551


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 332 VLKILYVTYNNVHALSKISSAILTTXN 412
           VL +L    N+VH LSK      TT N
Sbjct: 15  VLLLLTNADNSVHILSKYQLITSTTLN 41


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 380 WIKHAHCCRSHIIFLTLLQPSG 315
           W K    C SHII + L    G
Sbjct: 46  WFKAIGTCGSHIIIVGLFYEFG 67


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +1

Query: 256 IFC*CIVPMLALHFFSSILFPLGCKSVKNIICD 354
           ++C CI+    +   +++  P G K+V  ++ D
Sbjct: 61  LYCECILKNFNILDKNNVFKPQGIKAVMELLID 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,284
Number of Sequences: 438
Number of extensions: 2835
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)