Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0371.Seq
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p...    28   5.7  
At2g38250.1 68415.m04697 DNA-binding protein-related contains si...    28   5.7  
At3g29110.1 68416.m03645 terpene synthase/cyclase family protein...    27   7.5  
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c...    27   7.5  

>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|Q9Y672 Dolichyl pyrophosphate
           Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Homo sapiens}; contains Pfam
           profile PF03155: ALG6, ALG8 glycosyltransferase family
          Length = 533

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 608 WPAKKTFPIIXHQNATXNKLKEQAWQTLVNDFN-CLFVVSH 489
           +PA   F ++ H+N T     E AW   +   N CL ++ H
Sbjct: 160 FPAALFFVLVYHRNRTRGGKSEVAWHIAMILLNPCLILIDH 200


>At2g38250.1 68415.m04697 DNA-binding protein-related contains
           similarity to DNA-binding protein GI:170271 from
           [Nicotiana tabacum]
          Length = 289

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 501 RRFPRTPSQLRLKWENL 451
           + FPR+P Q + KW+NL
Sbjct: 81  KSFPRSPEQCKCKWKNL 97


>At3g29110.1 68416.m03645 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family;
           similar to epidermal germacrene C synthase  GB:AAC39431
           [Lycopersicon esculentum], (+)-delta-cadinene synthase
           GB:P93665 [Gossypium hirsutum]
          Length = 569

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  IFQNDNYMVVSTCKIFNLEFVHT 88
           +F+    MV++TCKI N EF+ T
Sbjct: 500 VFREFRKMVMNTCKIMNEEFLKT 522


>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
           contains Pfam profiles: PF05033: Pre-SET motif, PF00856
           SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
          Length = 693

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 319 LGCKSVKNIICDLQQCACFIQNFICNPYH 405
           LGC++ ++  C  Q C C  +N    PYH
Sbjct: 456 LGCQNCRHQPCMHQNCTCVQRNGDLLPYH 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,291
Number of Sequences: 28952
Number of extensions: 197316
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)