Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0370.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.39 
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    28   0.68 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   1.2  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 193  LNILNYIGIVGNPENSKGHIQSKSLSNIKCII 98
            L +L  IGI  +P+ SK HI+ KSL  + C I
Sbjct: 1145 LRMLQKIGISPDPDLSKKHIKLKSLIIVVCSI 1176


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 136 CDLSNFQDYLLFLYNSICLTAXEIIDQYLSTYSD 237
           CDL +  ++LL+L NS  +T    +D   + Y+D
Sbjct: 328 CDLYSLSNFLLYLENSCVITYDVSLDCSFNEYND 361


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 103 YT*YLRVIWIVCDLSNFQDYLLFLYNS 183
           Y   LR+I+ + D S F+DYL F Y +
Sbjct: 813 YVMILRLIYGIVDQSAFEDYLRFYYGN 839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,559
Number of Sequences: 5004
Number of extensions: 27738
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)