Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0370.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)                52   3e-07
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     27   8.6  
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)               27   8.6  

>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 338 DDDTIAXGEXDNA--NKQXVHPYIVXFHLVXRCSAIIVYXLCGWLXDSFIASF 490
           +D  +  G+ + A   ++  HPY+  FHL  R S++I Y LCGW  DSFI +F
Sbjct: 162 EDVALNFGDEEEALSRRKFRHPYVSFFHLFFRISSVIAYLLCGWFSDSFITNF 214


>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -1

Query: 199 QQLNILNYIGIVGNPENSKGHIQSKSLS 116
           ++L+++NY+GI+G+P ++      K +S
Sbjct: 259 EELSVINYLGIIGSPVDATNMQDFKRVS 286


>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
          Length = 592

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 139 HIQSKSLSNIKCIIYVNH*IKFIALILLFV 50
           H+QS ++ NI   I +N  I  IALI++ V
Sbjct: 347 HLQSPTIININITIMINIIIIIIALIMIMV 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,928
Number of Sequences: 59808
Number of extensions: 184939
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)