Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0370.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071297-1|AAL48919.1|  223|Drosophila melanogaster RE32705p pro...    71   9e-13
AE014296-1550|AAF50344.2|  218|Drosophila melanogaster CG5021-PA...    71   9e-13
AE014296-1551|AAN11977.1|  215|Drosophila melanogaster CG5021-PB...    69   4e-12

>AY071297-1|AAL48919.1|  223|Drosophila melanogaster RE32705p
           protein.
          Length = 223

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
 Frame = +2

Query: 305 ATPAVPXVPLLDDDTIAXGEXDN------ANKQXVHPYIVXFHLVXRCSAIIVYXLCGWL 466
           A+  V  VPLLDDDTI  GE D       A ++  HPY+  FHL  R +AI++Y  CGW 
Sbjct: 2   ASATVRNVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGAAILIYMFCGWF 61

Query: 467 XDSFIASF 490
            DSFI SF
Sbjct: 62  SDSFITSF 69


>AE014296-1550|AAF50344.2|  218|Drosophila melanogaster CG5021-PA,
           isoform A protein.
          Length = 218

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
 Frame = +2

Query: 305 ATPAVPXVPLLDDDTIAXGEXDN------ANKQXVHPYIVXFHLVXRCSAIIVYXLCGWL 466
           A+  V  VPLLDDDTI  GE D       A ++  HPY+  FHL  R +AI++Y  CGW 
Sbjct: 2   ASATVRNVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGAAILIYMFCGWF 61

Query: 467 XDSFIASF 490
            DSFI SF
Sbjct: 62  SDSFITSF 69


>AE014296-1551|AAN11977.1|  215|Drosophila melanogaster CG5021-PB,
           isoform B protein.
          Length = 215

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
 Frame = +2

Query: 326 VPLLDDDTIAXGEXDN------ANKQXVHPYIVXFHLVXRCSAIIVYXLCGWLXDSFIAS 487
           VPLLDDDTI  GE D       A ++  HPY+  FHL  R +AI++Y  CGW  DSFI S
Sbjct: 6   VPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGAAILIYMFCGWFSDSFITS 65

Query: 488 F 490
           F
Sbjct: 66  F 66


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,232
Number of Sequences: 53049
Number of extensions: 273692
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)