Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0367.Seq
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 27 0.78
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 1.0
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 25 3.1
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 4.2
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 24 4.2
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 24 4.2
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 5.5
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 24 5.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 23 9.6
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 23 9.6
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 23 9.6
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 0.78
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 65 TLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVT 181
T+ +Q+ + HLA+A+ + V+ VY P A+ T
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTT 187
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 271 DTLPSRCWNCIHKCCYRQMYWILRCLSLNQC 179
D +PS C + I Y +YWI +C +++C
Sbjct: 203 DPIPSSCIHKIITVDYFSIYWISKC-EISKC 232
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 56 VPVTLIQTQTAKDPEHLAVAALMD--TVPTVVMEVY 157
VP TL+ + K P +A AAL+ T T++ E Y
Sbjct: 101 VPTTLVSKVSEKIPLKIASAALLQGLTAYTLIEEAY 136
>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 142
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 184 QCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCL 80
+C+ + + H HH W+ I C F +L L
Sbjct: 59 RCFLHNPKISHQHHSFWSLIEGCLEALQFGLLAIL 93
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 270 IHFHHAVGTVSISAATARCTGS 205
IH + + TV I ++T CTGS
Sbjct: 130 IHLTYLIDTVVIESSTFWCTGS 151
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.2 bits (50), Expect = 4.2
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +2
Query: 71 IQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVHLAV---AALMD 241
+ T A + E+ + D PT+ VY V Q + PVH + A ++D
Sbjct: 633 VDTVFASETENENTVFIRDNKPTMYTPVYFAEVGKVNCHVYQLSSLPVHSLITGPAVIVD 692
Query: 242 TVPT 253
T T
Sbjct: 693 TTQT 696
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -2
Query: 217 MYW-ILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCLSLNQCYW 59
M+W I+ + N + ++ H WN + C Q F + + + YW
Sbjct: 385 MFWYIVANCTTGLAVVNTDFPLNDAHHLWNHLENLCNNQSFNSCQLQKITRGYW 438
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 5 LMDTAPTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHP 163
L+ T +V + + + + ++ + + L + D V TV+ME+ HP
Sbjct: 264 LVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHP 316
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/29 (24%), Positives = 15/29 (51%)
Frame = -2
Query: 295 VLRQLPVDDTLPSRCWNCIHKCCYRQMYW 209
+L + ++L S+ +C+ CC +W
Sbjct: 254 LLNLVKTSESLSSQQMSCLRICCNSSSFW 282
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 71 IQTQTAKDPEHLAVAALMDTV 133
++T T DPEH VA + +V
Sbjct: 106 VRTPTVHDPEHYFVAQKLSSV 126
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -2
Query: 160 MIHFHHDCWNCIHKCCY 110
M H+ DCW+ +C Y
Sbjct: 360 MAHYACDCWDAEIQCSY 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,078,602
Number of Sequences: 5004
Number of extensions: 19959
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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