Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0367.Seq
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0839 + 32340226-32340360,32340482-32340832,32341933-323420... 28 1.2
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578... 28 1.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 27 2.7
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 27 3.6
10_02_0156 + 5946160-5946423,5946558-5947063,5947430-5947486,594... 26 4.7
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 26 4.7
01_01_0351 + 2790469-2790534,2791089-2791173,2791921-2792021,279... 26 4.7
01_06_1841 + 40267902-40268485,40269290-40270421 26 6.3
12_01_0588 + 4795620-4796093,4796124-4797476,4797575-4797827,479... 25 8.3
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 25 8.3
01_06_1562 - 38268514-38268902,38269310-38269451,38269517-382698... 25 8.3
01_01_0981 + 7766025-7766753 25 8.3
>01_06_0839 +
32340226-32340360,32340482-32340832,32341933-32342013,
32342368-32343150
Length = 449
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 26 VVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTL 184
V+ V A+P + Q Q + E ++ + L V EV HPP V TL
Sbjct: 397 VLARVEGGQAIPERIAQVQPFEADEAMSESVLTGNVSMSKTEVVHPPPVYFTL 449
>07_01_0752 -
5783305-5783416,5783739-5783836,5784550-5784675,
5784890-5785090,5785185-5785268,5785519-5785566,
5785709-5785763,5786130-5786185,5786281-5786365,
5786485-5786558,5787093-5787159,5788134-5788216
Length = 362
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 229 CYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHK 119
CY+++Y R L QC+ W I H++ N HK
Sbjct: 187 CYKEIY---RVLKPGQCFAVYEWCITDHYEPNNATHK 220
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -2
Query: 154 HFHHDCWNC--IHKCCYRQMFWILRCL 80
HF+ +CWNC CY W L+ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 47 PPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHP 163
PPAVP++ T +++ +H +VA +V Y+P
Sbjct: 308 PPAVPISSTDTHSSEQGQHSSVA---PRTTNIVTSAYNP 343
>10_02_0156 +
5946160-5946423,5946558-5947063,5947430-5947486,
5947664-5947902,5948200-5948318,5948400-5948486,
5951757-5951816
Length = 443
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 89 KDPEHLAVAA--LMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVHLAVAALMDTVPTA*W 262
+DPE A A + +PT+ VY P V +QTQ+A PV L+ A W
Sbjct: 132 QDPEIAAGAGSYIRWMIPTLF--VYGPLQCHVRFLQTQSAVVPVMLSAGATAANHVLVCW 189
Query: 263 KCIIHR 280
++HR
Sbjct: 190 -LLVHR 194
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 20 PTVVMEVYHPPAVPVTLIQTQTAKDPEHLA 109
PT + Y P VP+T++ T ++ PEH A
Sbjct: 50 PTRLPADYFPDRVPITIVDTSSS--PEHRA 77
>01_01_0351 +
2790469-2790534,2791089-2791173,2791921-2792021,
2792601-2792683,2792829-2792874,2792969-2793025,
2793118-2793172,2793244-2793344,2793432-2793495,
2793604-2793737,2794158-2794346
Length = 326
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 262 PSRCWNCIHKCCYRQMYWILRCL 194
PS CWN I C Y+IL +
Sbjct: 286 PSSCWNFIMTCVKTVYYYILNLI 308
>01_06_1841 + 40267902-40268485,40269290-40270421
Length = 571
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 95 PEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQ 205
PE +VA DT+ + M VYH LIQT+ ++
Sbjct: 312 PEEFSVAKYDDTLQKLRMAVYHMLRELKILIQTRASR 348
>12_01_0588 +
4795620-4796093,4796124-4797476,4797575-4797827,
4797989-4798108,4798542-4798564,4798734-4798841
Length = 776
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 158 HPPAVPVTLIQTQTAQDPVHLAVAALMD 241
HP P L+QT TAQ P HL ++ +MD
Sbjct: 210 HP--APDKLVQTMTAQYPSHL-LSPIMD 234
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 271 DTLPSRCWNCIHKCCYRQ 218
D LP C C H CC+ +
Sbjct: 22 DFLPFTCDRCDHNCCFNK 39
>01_06_1562 -
38268514-38268902,38269310-38269451,38269517-38269865,
38270848-38271107
Length = 379
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -2
Query: 205 LRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCLSLNQCYWNCRWMIHFH 32
L L+++QC + D + +H C R I CLSL + C H H
Sbjct: 312 LASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLIISGCLSLTSVHCACAHHPHRH 369
>01_01_0981 + 7766025-7766753
Length = 242
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 294 CFGNYRWMIHFHHAVGTVSISAATARCT 211
C ++ W H HH V V++ AAT R T
Sbjct: 45 CSSHHLWPGH-HHIVVPVTVDAATGRPT 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,611,989
Number of Sequences: 37544
Number of extensions: 144616
Number of successful extensions: 397
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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