Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0367.Seq
(299 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 38 0.002
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 34 0.025
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 33 0.057
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.057
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 32 0.075
SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5) 31 0.13
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 30 0.30
SB_55108| Best HMM Match : Oxidored_q1_N (HMM E-Value=5.5) 29 0.70
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_57561| Best HMM Match : fn3 (HMM E-Value=0) 28 1.6
SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6) 28 1.6
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1) 27 2.1
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 27 2.8
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 27 2.8
SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1) 27 2.8
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5) 27 3.7
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89) 26 4.9
SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_2277| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/86 (32%), Positives = 46/86 (53%)
Frame = +2
Query: 38 VYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVH 217
V H P V VTL++ +AK+ H+ + + V T+ V H P V VTL++ +A+ VH
Sbjct: 343 VVHIPLV-VTLVKVTSAKEVVHIPLVVTLVKV-TIAKVVVHIPLV-VTLVKVTSAELVVH 399
Query: 218 LAVAALMDTVPTA*WKCIIHR*LPKH 295
+ + + V +A K ++H L H
Sbjct: 400 IPLVVTLLKVTSA--KVVVHIPLVGH 423
Score = 33.5 bits (73), Expect = 0.032
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +2
Query: 5 LMDTAP-TVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVT 181
++DT T V H P V VTL++ +A++ H+ + + V T V H P V VT
Sbjct: 61 ILDTGKVTSAKVVVHIPLV-VTLLKATSAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VT 117
Query: 182 LIQTQTAQDPVHLAVAALMDTVPTA*WKCIIH 277
L++ +A+ VH+ + + V +A + ++H
Sbjct: 118 LVEVTSAKVMVHIPLVVTLVKVTSA--ELVVH 147
Score = 33.5 bits (73), Expect = 0.032
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +2
Query: 38 VYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVH 217
V H P V VTL+ +AK H+ + + V + + V H P V VTL++ +A++ VH
Sbjct: 163 VVHIPLV-VTLVNVTSAKVMVHIPLVVTLVKVTSAEL-VVHIPLV-VTLVEVTSAKEVVH 219
Query: 218 LAVAALMDTVPTA 256
+ + + V +A
Sbjct: 220 IPLVVTLLKVTSA 232
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 33.9 bits (74), Expect = 0.025
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = -2
Query: 241 IHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCLSLNQCY 62
IH C + + R ++ C CRW + D C C +R + R ++ C
Sbjct: 108 IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCK 163
Query: 61 WNCRWMIHFHHHCWSCIHKC 2
CRW I+ C C
Sbjct: 164 STCRWRINRQADIHRCKSTC 183
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -2
Query: 241 IHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCLSLNQCY 62
IH C + + R ++ C CRW + D C C +R I R +++C
Sbjct: 125 IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCK 180
Query: 61 WNCRWMI 41
CRW +
Sbjct: 181 STCRWQL 187
Score = 33.1 bits (72), Expect = 0.043
Identities = 19/80 (23%), Positives = 30/80 (37%)
Frame = -2
Query: 241 IHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCLSLNQCY 62
IH C + + R ++ C CRW + D C C +R + R ++ C
Sbjct: 91 IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCK 146
Query: 61 WNCRWMIHFHHHCWSCIHKC 2
CRW + +C C
Sbjct: 147 STCRWRLDRQADIHTCKSTC 166
Score = 32.7 bits (71), Expect = 0.057
Identities = 19/80 (23%), Positives = 30/80 (37%)
Frame = -2
Query: 241 IHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCLSLNQCY 62
IH C + + R ++ C CRW + D C C +R + R ++ C
Sbjct: 74 IHTCKSTCPWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCK 129
Query: 61 WNCRWMIHFHHHCWSCIHKC 2
CRW + +C C
Sbjct: 130 STCRWRLDRQADIHTCKSTC 149
>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 1243
Score = 32.7 bits (71), Expect = 0.057
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = -2
Query: 238 HKCCY-RQMYWILRCLSLNQC---YWNCR-WMIHFHHDCWNC-IHKCCYRQMFWIL-RCL 80
HKCCY R + L+C +C ++N R + +H +N HKCC+ Q+ IL +C
Sbjct: 180 HKCCYGRIIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPILEQCQ 239
Query: 79 SLNQC 65
+ C
Sbjct: 240 QMQVC 244
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 32.7 bits (71), Expect = 0.057
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = -2
Query: 238 HKCCY-RQMYWILRCLSLNQC---YWNCR-WMIHFHHDCWNC-IHKCCYRQMFWIL-RCL 80
HKCCY R + L+C +C ++N R + +H +N HKCC+ Q+ IL +C
Sbjct: 180 HKCCYGRIIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPILEQCQ 239
Query: 79 SLNQC 65
+ C
Sbjct: 240 QMQVC 244
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 32.3 bits (70), Expect = 0.075
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = -2
Query: 238 HKCCYRQMYWILRCLSLNQCYWN----CRWMIHFHHDCWNCIHKCCYRQMFWILR 86
H CYR ++ C CY+ C + H+H+ C+ + CYR + R
Sbjct: 13 HNRCYRHHHYCCYCHH-RYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHYCCYR 66
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Frame = -2
Query: 124 HKCCYRQMFWILRCLSLNQCYWN----CRWMIHFHHHCW-SCIHKC 2
H CYR + C CY+ C + H+H+ C+ H+C
Sbjct: 13 HNRCYRHHHYCCYC-HHRYCYYRHHHYCWYRHHYHYPCYRHYYHRC 57
>SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)
Length = 191
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/85 (22%), Positives = 26/85 (30%)
Frame = -2
Query: 265 LPSRCWNCIHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILR 86
LP CW C+ YR + L R +H + YR +
Sbjct: 10 LPPLCWGCVRVFIYRHYGGVAYECPLTAIVLGLRASVHLPPLRCGRVRVSTYRHCVGVAC 69
Query: 85 CLSLNQCYWNCRWMIHFHHHCWSCI 11
SL R +H CW C+
Sbjct: 70 ECSLTAITVGSRTSVHLPPLCWGCV 94
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/53 (26%), Positives = 18/53 (33%)
Frame = -2
Query: 265 LPSRCWNCIHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYR 107
LP CW C+ YR + SL R +H W + YR
Sbjct: 86 LPPLCWGCVRVFIYRHYGGVAYECSLTAIVLGLRASVHLPPLRWGRVRVFTYR 138
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/81 (23%), Positives = 25/81 (30%)
Frame = -2
Query: 262 PSRCWNCIHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRC 83
P RC + YR + SL R +H CW C+ YR +
Sbjct: 50 PLRCGR-VRVSTYRHCVGVACECSLTAITVGSRTSVHLPPLCWGCVRVFIYRHYGGVAYE 108
Query: 82 LSLNQCYWNCRWMIHFHHHCW 20
SL R +H W
Sbjct: 109 CSLTAIVLGLRASVHLPPLRW 129
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 253 CWNCIHKCCYRQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 113
C+ + CY Y+ C CY+ C ++HH + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2
Query: 139 CWNCIHKCCYRQMFWILRCLSLNQCYWNCRWMIHFHHHCWSCIHKC 2
C+ + CY ++ C CY+ C + +++HH + C + C
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-C-YCYYYYHHYYCCYYCC 519
>SB_55108| Best HMM Match : Oxidored_q1_N (HMM E-Value=5.5)
Length = 377
Score = 29.1 bits (62), Expect = 0.70
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +2
Query: 14 TAPTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQT 193
T T E PP VP L+ T+ K+P L A+ D +P V + P T T
Sbjct: 182 TLETARAETAAPP-VPPKLLDTE--KEPRSLGAKAVQDIIPLHVAKTGTPSFPCKTAETT 238
Query: 194 QTAQDPVH 217
QT +H
Sbjct: 239 QTYLGTLH 246
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.7 bits (61), Expect = 0.92
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = +2
Query: 20 PTVVMEVYHPPAVPVTLIQTQTAK---DPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQ 190
PT ++E P T+ +T T K +P + PT + E P T+ +
Sbjct: 9 PTTIIETTTTTEEPTTITETTTTKTTEEPTTITETTTTTEEPTTITETTTTTEEPTTITE 68
Query: 191 -TQTAQDPVHLAVAA 232
T T ++P A
Sbjct: 69 ITTTTEEPTTTTTTA 83
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 217 MYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 113
M + C N C +NC H+ + +C HKCC
Sbjct: 311 MQYYRGCAFANHCDFNC---THYINGSSDCNHKCC 342
>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1614
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 32 MEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEV 154
+E + P V ++ T + K P + +AAL+ VP +V+ +
Sbjct: 1320 IERWSSPRGFVYIVNTDSGKSPAMMLIAALLTVVPYLVLTI 1360
>SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 388
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 62 VTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVHL 220
+T+I T ++ P H+ VA ++ T + Y VP+ +I T ++ P H+
Sbjct: 8 ITIIITSSSDYPYHM-VAIIIITTIIITSSDYPYHMVPIIVIITSSSDYPYHM 59
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 41 YH--PPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPV 214
YH P + +T+I T ++ P H+ ++ T+ Y +P+ +I T + P
Sbjct: 227 YHMMPIIIIITIIITSSSDYPYHMVPIIIIITIIITSSSDYPYHMMPIIVIITSSFDYPY 286
Query: 215 HLAVAALMDTVPTA 256
H+ ++ + T+
Sbjct: 287 HMVPIIIITIIITS 300
>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
Length = 338
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +2
Query: 17 APTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTV--VMEVYHPPAVPVTLIQ 190
AP V E++HPP V V Q P H + + + +V + H V Q
Sbjct: 4 APIVAPEIHHPPQVVVHTPYEQQQLTPVHTPLEPVHTSSKSVHTSPQSVHTSQVHNAAQQ 63
Query: 191 TQTAQDPVHL 220
PVH+
Sbjct: 64 VNNEAQPVHI 73
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/81 (20%), Positives = 28/81 (34%)
Frame = +2
Query: 5 LMDTAPTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTL 184
+ D P++V ++ P A H A P+ V H PA P L
Sbjct: 243 IRDVRPSLVTDLARHAGSPHVSATPTAAGVSAHPIPVATSKVPPSGVSSAPHKPAQPGLL 302
Query: 185 IQTQTAQDPVHLAVAALMDTV 247
P+H+ +A ++
Sbjct: 303 AHFSQTHSPLHMPTSAAAGSI 323
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Frame = -2
Query: 202 RCLSLNQCYWNCRWMIHFHHDCWNCI--HKCCYRQMFWI----LRCLSLNQC--YWNCRW 47
RC+ +N+C N W H+C N I ++C R + + C L++C + C
Sbjct: 432 RCVDINECKRNNGWC---EHECINIIGTYRCRCRDGYKLEPNRRTCQDLDECALFSGCEM 488
Query: 46 MIHFHHHCWSC 14
+ H + C
Sbjct: 489 LCHNTRGSYYC 499
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 83 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVHLAVAAL 235
+A P HL A+ + P ++ +HP P L+Q + VH+ V L
Sbjct: 606 SAATPSHLGKVAVEEKRPRLLRSEFHPRRSP--LLQLLSNTPDVHVVVVEL 654
>SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)
Length = 456
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/68 (17%), Positives = 27/68 (39%)
Frame = +2
Query: 41 YHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVHL 220
YH + + +I T H ++ + +T + YH ++ T + +Q H
Sbjct: 219 YHHRNIIIIIITTSLPSQKHHRDISIITETSLASLQHHYHHRSITTTSVSSQKHHHQHHY 278
Query: 221 AVAALMDT 244
+ + +T
Sbjct: 279 NIITITET 286
>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
Length = 386
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 47 PPAVP-VTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVP 175
P A+P VTL+Q + ++V A P + + + PP +P
Sbjct: 127 PAAMPGVTLVQVTVVTNTSAISVMATTGQGPVLFVPLREPPIIP 170
>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +2
Query: 104 LAVAALMDTVPTVVMEVYHPPAV 172
+++ AL++ + T +++ YHPPA+
Sbjct: 76 ISLEALIECICTALLDSYHPPAL 98
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = -2
Query: 271 DTLPSRCWNCI--HKCCYRQMYWI----LRCLSLNQCYWNCRWMIHFHHDCWNCI 125
+T P RC N + + C + Y RC+ +N+C N W HDC N +
Sbjct: 2114 NTCPGRCINRLGSYTCDCPRGYTFDNSSRRCIDINECERNNGWC---EHDCINIL 2165
>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
Length = 724
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 97 WILRCLSLNQCYWNCRWMIHFHHHCWSCIH 8
W+++ + N CY + + F C SC H
Sbjct: 601 WLIKMVKHNVCYKRDSYALFFASPCTSCRH 630
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -2
Query: 211 WILRCLSLNQCYWNCRWMIHFHHDCWNCIH 122
W+++ + N CY + + F C +C H
Sbjct: 601 WLIKMVKHNVCYKRDSYALFFASPCTSCRH 630
>SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 26 VVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYH 160
V +VY +P L QT KDP +A LM+ + V + YH
Sbjct: 168 VTSDVYKKLVLPGILEQTINCKDP--IAQEYLMECIIQVFPDEYH 210
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 14 TAPTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVT 181
TA + + +P A+P+T + ++ + T P++ + +P A+P+T
Sbjct: 223 TALPITSPIIYPTALPIT--SPTIYHTALTINLSNYLPTAPSITSPIIYPTALPIT 276
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = +2
Query: 8 MDTAPTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLI 187
+ T P + + PP + Q P HL+ T+P + + PP +
Sbjct: 64 LSTTPYYIQSISVPPLTTSSPSQYHPLLHPVHLS------TIPYYIQSISVPPLTTSSPS 117
Query: 188 QTQTAQDPVHLA 223
Q PVHL+
Sbjct: 118 QYHPLLHPVHLS 129
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 20 PTVVMEVYHPPAVPVTLIQTQTAKD--PEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQT 193
P++ V P++ ++ Q ++ K + ++ L+ VP++ V H P++ ++ Q
Sbjct: 290 PSIKTSVTQVPSIKTSVTQFRSIKTLVTQVPSIKTLVTQVPSIKTSVTHVPSIKTSVTQV 349
Query: 194 QTAQDPV 214
+ + V
Sbjct: 350 PSGKTSV 356
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 98 EHLAVAALMDTVPTVVMEVYHPPAVPVTLIQT 193
EH+ +AA T P V V HP + P T Q+
Sbjct: 464 EHMELAADPGTQPCVTNAVIHPGSSPETTDQS 495
>SB_2277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -2
Query: 250 WNCIHKCCYRQMYWILRCLSLNQCY-WNCRWMIHFHHDCWNCIHKCCYRQMFWILRCLSL 74
WN C RQ W L C+ W + WN C RQ W L C
Sbjct: 24 WNPDLSCLMRQYNWWLAWNIALSCHPRQYNWWL-----TWNLSLLCLMRQYNWWLACNPA 78
Query: 73 NQCY 62
C+
Sbjct: 79 VLCF 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,387,247
Number of Sequences: 59808
Number of extensions: 169914
Number of successful extensions: 476
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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