Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0367.Seq
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    29   0.016
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    29   0.016
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   7.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   7.6  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 0.016
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 139 CWNCIHKCCYRQMFWILRCLS-LNQCYW 59
           C NCIH   +  +FW+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62



 Score = 27.5 bits (58), Expect = 0.038
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 253 CWNCIHKCCYRQMYWILRCLS-LNQCYW 173
           C NCIH   +  ++W+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 0.016
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 139 CWNCIHKCCYRQMFWILRCLS-LNQCYW 59
           C NCIH   +  +FW+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510



 Score = 27.5 bits (58), Expect = 0.038
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 253 CWNCIHKCCYRQMYWILRCLS-LNQCYW 173
           C NCIH   +  ++W+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = -2

Query: 169 CRWMIHFHHDCWNCIHKCCYRQMFWILRCLSLNQCYWN 56
           CR+  H    C  C    C  +M     C   N   WN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 229 CYRQMYWIL 203
           C+  MYWI+
Sbjct: 418 CFNLMYWII 426


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 229 CYRQMYWIL 203
           C+  MYWI+
Sbjct: 418 CFNLMYWII 426


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 229 CYRQMYWIL 203
           C+  MYWI+
Sbjct: 356 CFNLMYWII 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,503
Number of Sequences: 438
Number of extensions: 1517
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)