Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0366.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 0.68
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 0.90
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.1
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 2.1
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 2.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 3.6
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 4.8
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 26 4.8
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.8
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.8
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 25 6.3
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 6.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 8.4
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 25 8.4
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 8.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.4
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 8.4
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 0.68
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Frame = -3
Query: 503 KNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQ--EDNDSDXXXXXXXXXXXXXXX 330
+N ++ RKTK+ E YK D N++ ++ Q ED +
Sbjct: 196 ENVEMVQRKTKNERKEDNPYKPYEDENDFLQQSEADQPSEDTFTTIGPQNSLTVNSTIEK 255
Query: 329 XXXXERRTHDKF-SIGKNGIS-AERTKQREVKEKKSKANMRKTTKGKR 192
++T S + I+ +E++ R++K KKSK K+ + KR
Sbjct: 256 HKSDNKKTFGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKR 303
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 0.90
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = -3
Query: 269 AERTKQREVKEKKSKA-NMRKTTKGKRT-TADPPN------IQREKERVWKNQKKGTASS 114
A R K+ E K+ SKA ++ + KR+ P N IQR +ER+ + K T
Sbjct: 394 AARAKENEAKDLYSKAESITQDLNAKRSHPPQPANLDYSSAIQRAQERLTLEESKLTDLR 453
Query: 113 RLSPSRWVN 87
PS++VN
Sbjct: 454 TAEPSQYVN 462
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/51 (25%), Positives = 31/51 (60%)
Frame = -3
Query: 281 NGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 129
NG SAE K++++++++++ + + +R + QRE+E+ + Q+K
Sbjct: 69 NG-SAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEK 118
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = -3
Query: 272 SAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRW 93
SA+ + KEKKSK +K K K +AD I ++ + K KKG + ++ S
Sbjct: 61 SADEEASVKRKEKKSKHEHKKHKKDK-PSADKDRISKKDK---KKSKKGKSKTK-EESIE 115
Query: 92 VNPA*RSRIIQNRIPTRKSRN 30
+N ++I Q I + + N
Sbjct: 116 INAEEGAKIAQPAIGSANASN 136
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 432 VIRLVSFFF*SQILRLSRWNI 494
VI LV+FF QI L+RWN+
Sbjct: 578 VISLVAFFVIVQIFCLARWNL 598
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 3.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = -3
Query: 266 ERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE-----RVWKNQKKGTASSRLSP 102
+++ +R+ KEKK ++ K K A QR +E R K KKG A + P
Sbjct: 170 KKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKKP 229
Query: 101 SR 96
S+
Sbjct: 230 SK 231
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -3
Query: 254 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 132
++E KEKK+ ++ + GK+ +P + E+ K+ K
Sbjct: 209 KKEEKEKKTAVDVSDSVNGKKRKTEPAGEGEQTEKKSKSTK 249
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 266 ERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQ 135
ER +Q K++ K N ++T K T + QRE+ER+ N+
Sbjct: 31 ERVEQAIAKKEAQKKNRKETFKRAETFINNYR-QRERERIRLNR 73
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -3
Query: 284 KNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 114
K + ++ K K+ K N+ T G T N +EK R WK + + +S
Sbjct: 144 KTDVISKALKFHHTIYKERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVAS 200
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 278 GISAERTKQREVKEKKSKANMRKTTKGKRTTA-DPPNIQREKERVWKNQKKGTASSRLSP 102
G ++ K EV + SK N K KGK+ + DP +++ + + TA +
Sbjct: 2 GSKGKKGKSSEVNLETSK-NKEKNIKGKKKNSLDPIEKNKQETAGLQTTSRPTAKQLVGG 60
Query: 101 SRW 93
S W
Sbjct: 61 SSW 63
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 6.3
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Frame = -3
Query: 263 RTKQREVKEKKSKANMRKTTKGKRTTADP-----PNIQREKERVWKNQKKG---TASSRL 108
RT + KSK RKT ++ P+I + K + K K TA +L
Sbjct: 32 RTTTSNLDSVKSKKKRRKTISDASIVSNGSLVSHPSIDKGKLSILKRYKMSHRLTAIDKL 91
Query: 107 SPSR----W--VNPA*RSRIIQNRIPTRKSRNWKRK 18
P W +N A R Q+R + +NWK+K
Sbjct: 92 RPLTVLVAWKQLNIAMRPIFPQHRYTEQDKKNWKKK 127
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 401 QIRVLHIHYDRNQTCILLFLKSNPSSFEMEYXYFFAPVSSSFRSXPDI 544
+IR HY +LL+ S+ Y Y +AP ++ F+ I
Sbjct: 609 KIREAVKHYVHGLCWVLLYYYQGCPSWTWYYPYHYAPFAADFKDLASI 656
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 242 KEKKSKANMRKTTKGKRTTADPPNIQREKE 153
K+K + N +K KGK T + P ++E
Sbjct: 518 KDKDASRNNKKNKKGKHTQIEDPTAASKEE 547
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 272 SAERTKQREVKEKKSKANMRKTTKGKR----TTADPPNIQREKERVWKNQKK 129
S E R+VKEK + N + +G+R Q+E ER K+ +K
Sbjct: 49 SMEEDDHRQVKEKNTSENSVEQKRGRRMFGALLGTLGKFQQESEREQKSARK 100
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 311 RTHDKFS-IGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQ 135
R HD F+ + K+ E+ +Q +KE +K ++ K + +Q K+ + +
Sbjct: 166 RPHDYFAEMLKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQRE 225
Query: 134 KKGT 123
KK T
Sbjct: 226 KKET 229
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 185 ADPPNIQREKERVWKNQKKGTASSRLSPSRWVNP 84
A P I+++ R+W + K+G S L R ++P
Sbjct: 177 AAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSP 210
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -3
Query: 257 KQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWVNP 84
K EV+ + + N+ + TK D P Q +K+ ++++ + S S+ V+P
Sbjct: 7 KMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSVSP 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,225
Number of Sequences: 5004
Number of extensions: 25628
Number of successful extensions: 116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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