Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0366.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 32 0.40
01_01_0012 + 71903-72935,73468-73981,74619-76008 31 0.70
11_06_0507 + 24402239-24402297,24402686-24402753,24403704-244037... 31 0.92
02_04_0461 - 23125260-23125868 30 1.2
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383... 29 2.8
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 29 2.8
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 3.7
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 29 3.7
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 29 3.7
11_06_0710 - 26492093-26493460 28 4.9
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 28 4.9
01_05_0151 + 18618340-18618419,18619756-18620116 28 4.9
03_06_0713 - 35687672-35689219 28 6.5
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 28 6.5
11_06_0207 + 21214631-21216121 27 8.6
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = -3
Query: 260 TKQREVKEKK--SKANMRKTTKGKR---TTADPPNIQREKERVWKNQKKG 126
TK+ V++K SKA+ RK KG+ +T+D PN + K+ V Q+KG
Sbjct: 875 TKKTSVRDKPYISKADRRKLKKGQNVGDSTSDSPNGEAAKKPVNSQQEKG 924
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 31.1 bits (67), Expect = 0.70
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -3
Query: 272 SAERTKQREV--KEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 99
S+ R + R + + KKS + ++ K R + P+ R R S+LSP+
Sbjct: 598 SSRRNRSRSISPRHKKSSRSDSRSPKRHREESLSPSKSRRSARAGSRSPGQHKGSKLSPT 657
Query: 98 RWVNPA*RSRIIQNRIPTRKSRNWKRKRNIK 6
R + + RSR ++R K+RN +K + K
Sbjct: 658 RDHHSSRRSRRSRSR-SQEKNRNSDKKDSKK 687
>11_06_0507 +
24402239-24402297,24402686-24402753,24403704-24403785,
24403894-24403945,24405368-24405413,24405568-24405626,
24405736-24405803,24406009-24406119,24406236-24406312,
24406478-24406554
Length = 232
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 542 CRAKI*KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
C+ K + + QK + K K+++ EKE + D+ + E GSE ED D
Sbjct: 143 CQRCAEKLAYKRQKEKE--REKEKEISREKEMELKERDKRKREREGSEETEDTSED 196
>02_04_0461 - 23125260-23125868
Length = 202
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -3
Query: 269 AERTKQREVKEKKSKAN-MRKTTKGKRTTADPPNIQREKERVWKNQKK 129
A + KQRE +EK+ K N +R TK +R T +P IQ+ + + Q K
Sbjct: 131 AAKRKQREEREKRKKENVLRSGTKLQRVT-NPKTIQKIAKSKKRKQLK 177
>02_01_0526 -
3830705-3830932,3831684-3831748,3831958-3832104,
3832208-3832256
Length = 162
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -3
Query: 314 RRTHDKFSIGKNGISAER-TKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKN 138
RR K G G ER +K++ KEK+ K K + D + + W
Sbjct: 50 RRRRKKKKHGDRGKDKERDSKEKHSKEKEKSKRKHKDDDFKEISKDDYFAKNNEFATWLK 109
Query: 137 QKKGTASSRLS 105
++KG S LS
Sbjct: 110 EEKGKFFSDLS 120
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = -3
Query: 284 KNGISAERTKQREVKEK-KSKANMRKTTKGKRTTADPPNIQREKE--RVWKNQKKGTASS 114
K+ A++ ++E+K+K K +A MRK K ++ A +REKE + K Q+K +
Sbjct: 332 KDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEA 391
Query: 113 RLSPSRWVNPA*RSRIIQNRIPTRKSRNWKRK 18
+ R +R Q + + KR+
Sbjct: 392 QKEQKRREKEEAETRKQQKKQQEEAEKEQKRR 423
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 461 LEKEGYKSDYDRNEYEERGSEHQEDND 381
+E + YKSD D N YE+ E+ +D+D
Sbjct: 676 IEGQDYKSD-DENAYEDDDEEYDDDDD 701
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -3
Query: 263 RTKQREVKEKKSKANMRKTTKG-KRTTADPPNIQREKERVWKNQKKGTASSRLSPSR 96
R KQ+ ++ + K ++ ++G KRT+ D + +K+++ KN+ K ++ + S+
Sbjct: 545 RGKQKGRRKSREKNINKEPSRGTKRTSGDSTIEESQKQKLQKNKSKASSGGQKKTSK 601
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -3
Query: 311 RTHDKFSI-GKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADP---PNIQREKERVW 144
R+H S GKN + + R +K K + + K KGK+ P P ++ E+ +
Sbjct: 338 RSHQTESAEGKNVVVNDSVPPRMIKPKNPEVGVWKVNKGKKPVLKPRPRPTFKQLLEK-Y 396
Query: 143 KNQKKGTASSRLSPSR 96
+QK SRL ++
Sbjct: 397 TSQKNTNVFSRLGGAK 412
>11_06_0710 - 26492093-26493460
Length = 455
Score = 28.3 bits (60), Expect = 4.9
Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 2/144 (1%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKS--DYDRNEYEERGSEHQEDNDSDXXXXXXXX 351
K +++K S D EK+ K + D +E +++ S+ + N D
Sbjct: 135 KKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKS 194
Query: 350 XXXXXXXXXXXERRTHDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPN 171
++ K S GK+ + K ++ + KSK++ K++ ++
Sbjct: 195 KKKSSDEDNDGAKKKKKKKSKGKSSDEEDDEKPKKKSKSKSKSSSSDEEDEKKSKSEGQA 254
Query: 170 IQREKERVWKNQKKGTASSRLSPS 99
+ KE ++++ G+AS+ S S
Sbjct: 255 AAKPKE---EDEEGGSASASASTS 275
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -3
Query: 263 RTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRW 93
R K+RE +E++ + ++ K K + ++EK++ K +KK + W
Sbjct: 139 RRKEREEEERRRRRKDKERRKRKEKERERERKKKEKKKRRKEEKKNLGKKAAVTNSW 195
>01_05_0151 + 18618340-18618419,18619756-18620116
Length = 146
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -3
Query: 302 DKFSIGKNGISAERTKQREVKEKK--SKANMRKTTKGKRTTADP-PNIQREKE 153
DK++ K +S + + KEKK S++N RK KGK T P REK+
Sbjct: 57 DKYNSSKRSVSLVQKHKESKKEKKKRSRSNERK-KKGKGTINHPWKPCDREKD 108
>03_06_0713 - 35687672-35689219
Length = 515
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 317 LHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIH 424
LH P + R+R L +S RY P + R+LH+H
Sbjct: 83 LHPSPRRNLARLRRLLSVSLLRRY-PALARRLLHLH 117
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -3
Query: 296 FSIGKNGISAER--TKQREVKEKKSKANMRKTTKGKRTTAD 180
FS K ++ +R + ++E+K+KKS +K TKGK +A+
Sbjct: 539 FSRKKKSVTPKRPSSSEKEIKDKKSSG--KKVTKGKGESAE 577
>11_06_0207 + 21214631-21216121
Length = 496
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 317 LHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIHYDRNQTCILLFLKSNP 472
+++ P H +F N R YP Q+R H+++ + +L+ +K+ P
Sbjct: 379 INSLPYHVLFLGHNQSICLRAEEYP---QLRANHVYFTDDHVDLLMLIKNGP 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,031,802
Number of Sequences: 37544
Number of extensions: 156569
Number of successful extensions: 808
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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