Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0366.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein. 32 1.8
BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor, argini... 32 1.8
AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor, argini... 32 1.8
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 3.1
AY533564-1|AAS45545.2| 2039|Homo sapiens ankyrin repeat-containi... 31 3.1
AY373757-1|AAR25662.1| 2062|Homo sapiens ankyrin repeat-containi... 31 3.1
AF317425-1|AAG38609.1| 2062|Homo sapiens GAC-1 protein. 31 3.1
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 3.1
AB209694-1|BAD92931.1| 206|Homo sapiens splicing factor, argini... 31 3.1
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 3.1
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 3.1
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 3.1
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 3.1
AF490258-1|AAO85466.1| 667|Homo sapiens XTP9 protein. 30 5.4
D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein. 30 7.2
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 7.2
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 7.2
BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for IM... 30 7.2
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 30 7.2
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 7.2
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 30 7.2
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 7.2
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 30 7.2
AB046765-1|BAB13371.2| 968|Homo sapiens KIAA1545 protein protein. 30 7.2
U08377-1|AAA19604.1| 951|Homo sapiens protein ( Human homolog o... 29 9.5
M98452-1|AAA35696.1| 356|Homo sapiens calnexin protein. 29 9.5
M94859-1|AAA21749.1| 592|Homo sapiens calnexin protein. 29 9.5
L18887-1|AAA21013.1| 592|Homo sapiens calnexin protein. 29 9.5
L10284-1|AAA36125.1| 592|Homo sapiens calnexin protein. 29 9.5
BC042843-1|AAH42843.1| 592|Homo sapiens calnexin protein. 29 9.5
BC003552-1|AAH03552.1| 592|Homo sapiens calnexin protein. 29 9.5
AJ271880-1|CAB72137.1| 592|Homo sapiens calnexin protein. 29 9.5
>BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein.
Length = 508
Score = 31.9 bits (69), Expect = 1.8
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 10/153 (6%)
Frame = -3
Query: 539 RAKI*KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD-XXXX 363
R K + +K + K +D EK+ K D +++ ER EH++D D +
Sbjct: 279 REKEREREKEREKEKERGKNKDRDKEREKDREK-DKEKDREREREKEHEKDRDKEKEKEQ 337
Query: 362 XXXXXXXXXXXXXXXERRTHDKFS----IGKNGISAERTKQREVKEKKSKANMR-----K 210
E+R DK S N R+ RE + ++S+++ R K
Sbjct: 338 DKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSK 397
Query: 209 TTKGKRTTADPPNIQREKERVWKNQKKGTASSR 111
T K K + + P + +K++ + ++ + R
Sbjct: 398 TIKRKSSRSPSPRSRNKKDKKREKERDHISERR 430
>BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 31.9 bits (69), Expect = 1.8
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 10/153 (6%)
Frame = -3
Query: 539 RAKI*KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD-XXXX 363
R K + +K + K +D EK+ K D +++ ER EH++D D +
Sbjct: 279 REKEREREKEREKEKERGKNKDRDKEREKDREK-DKEKDREREREKEHEKDRDKEKEKEQ 337
Query: 362 XXXXXXXXXXXXXXXERRTHDKFS----IGKNGISAERTKQREVKEKKSKANMR-----K 210
E+R DK S N R+ RE + ++S+++ R K
Sbjct: 338 DKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSK 397
Query: 209 TTKGKRTTADPPNIQREKERVWKNQKKGTASSR 111
T K K + + P + +K++ + ++ + R
Sbjct: 398 TIKRKSSRSPSPRSRNKKDKKREKERDHISERR 430
>AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 31.9 bits (69), Expect = 1.8
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 10/153 (6%)
Frame = -3
Query: 539 RAKI*KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD-XXXX 363
R K + +K + K +D EK+ K D +++ ER EH++D D +
Sbjct: 279 REKEREREKEREKEKERGKNKDRDKEREKDREK-DKEKDREREREKEHEKDRDKEKEKEQ 337
Query: 362 XXXXXXXXXXXXXXXERRTHDKFS----IGKNGISAERTKQREVKEKKSKANMR-----K 210
E+R DK S N R+ RE + ++S+++ R K
Sbjct: 338 DKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSK 397
Query: 209 TTKGKRTTADPPNIQREKERVWKNQKKGTASSR 111
T K K + + P + +K++ + ++ + R
Sbjct: 398 TIKRKSSRSPSPRSRNKKDKKREKERDHISERR 430
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 269 AERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 90
A R + R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638
Query: 89 NPA*RSRIIQNRIPTRKSRNWKR 21
+PA RS ++R P R+ R+ R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661
>AY533564-1|AAS45545.2| 2039|Homo sapiens ankyrin repeat-containing
cofactor-2 protein.
Length = 2039
Score = 31.1 bits (67), Expect = 3.1
Identities = 30/121 (24%), Positives = 46/121 (38%)
Frame = -3
Query: 512 REQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXX 333
+ +K + K K L +EK+ +SD E+G ++D + D
Sbjct: 892 KPEKERHLAESKEKHL-MEKKNKQSDNSEYSKSEKGKNKEKDRELDKKEKSRDKESINIT 950
Query: 332 XXXXXERRTHDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 153
+K S +G A+ K +KE K+K KT GK +I R KE
Sbjct: 951 NSKHI---QEEKKSSIVDGNKAQHEKPLSLKE-KTKDEPLKTPDGKEKDKKDKDIDRYKE 1006
Query: 152 R 150
R
Sbjct: 1007 R 1007
>AY373757-1|AAR25662.1| 2062|Homo sapiens ankyrin repeat-containing
protein protein.
Length = 2062
Score = 31.1 bits (67), Expect = 3.1
Identities = 30/121 (24%), Positives = 46/121 (38%)
Frame = -3
Query: 512 REQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXX 333
+ +K + K K L +EK+ +SD E+G ++D + D
Sbjct: 915 KPEKERHLAESKEKHL-MEKKNKQSDNSEYSKSEKGKNKEKDRELDKKEKSRDKESINIT 973
Query: 332 XXXXXERRTHDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 153
+K S +G A+ K +KE K+K KT GK +I R KE
Sbjct: 974 NSKHI---QEEKKSSIVDGNKAQHEKPLSLKE-KTKDEPLKTPDGKEKDKKDKDIDRYKE 1029
Query: 152 R 150
R
Sbjct: 1030 R 1030
>AF317425-1|AAG38609.1| 2062|Homo sapiens GAC-1 protein.
Length = 2062
Score = 31.1 bits (67), Expect = 3.1
Identities = 30/121 (24%), Positives = 46/121 (38%)
Frame = -3
Query: 512 REQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXX 333
+ +K + K K L +EK+ +SD E+G ++D + D
Sbjct: 915 KPEKERHLAESKEKHL-MEKKNKQSDNSEYSKSEKGKNKEKDRELDKKEKSRDKESINIT 973
Query: 332 XXXXXERRTHDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 153
+K S +G A+ K +KE K+K KT GK +I R KE
Sbjct: 974 NSKHI---QEEKKSSIVDGNKAQHEKPLSLKE-KTKDEPLKTPDGKEKDKKDKDIDRYKE 1029
Query: 152 R 150
R
Sbjct: 1030 R 1030
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 269 AERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 90
A R + R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638
Query: 89 NPA*RSRIIQNRIPTRKSRNWKR 21
+PA RS ++R P R+ R+ R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661
>AB209694-1|BAD92931.1| 206|Homo sapiens splicing factor,
arginine/serine-rich 12 variant protein.
Length = 206
Score = 31.1 bits (67), Expect = 3.1
Identities = 36/167 (21%), Positives = 63/167 (37%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXX 345
++ SR+++ K K+ EK+ K + +R + E+ E ++ D D
Sbjct: 45 RSHSRDKRKDTREKIKEKERVKEKDREK-EREREKEREKEKERGKNKDRDKEREKDREKD 103
Query: 344 XXXXXXXXXERRTHDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQ 165
E+ H+K + ++ K+RE K RK K RT PP
Sbjct: 104 KEKDREREREKE-HEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRT---PPRSY 159
Query: 164 REKERVWKNQKKGTASSRLSPSRWVNPA*RSRIIQNRIPTRKSRNWK 24
R + ++ S SR + + +R P+ +SRN K
Sbjct: 160 NASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKK 206
Score = 29.9 bits (64), Expect = 7.2
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Frame = -3
Query: 539 RAKI*KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD-XXXX 363
R K + +K + K +D EK+ K D +++ ER EH++D D +
Sbjct: 70 REKEREREKEREKEKERGKNKDRDKEREKDREK-DKEKDREREREKEHEKDRDKEKEKEQ 128
Query: 362 XXXXXXXXXXXXXXXERRTHDKFS----IGKNGISAERTKQREVKEKKSKANMR-----K 210
E+R DK S N R+ RE + ++S+++ R K
Sbjct: 129 DKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSK 188
Query: 209 TTKGKRTTADPPNIQREK 156
T K K + + P + +K
Sbjct: 189 TIKRKSSRSPSPRSRNKK 206
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 269 AERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 90
A R + R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638
Query: 89 NPA*RSRIIQNRIPTRKSRNWKR 21
+PA RS ++R P R+ R+ R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 269 AERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 90
A R + R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 544 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 603
Query: 89 NPA*RSRIIQNRIPTRKSRNWKR 21
+PA RS ++R P R+ R+ R
Sbjct: 604 SPARRSGRSRSRTPARRGRSRSR 626
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 269 AERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 90
A R + R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 369 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 428
Query: 89 NPA*RSRIIQNRIPTRKSRNWKR 21
+PA RS ++R P R+ R+ R
Sbjct: 429 SPARRSGRSRSRTPARRGRSRSR 451
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 269 AERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 90
A R + R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 627 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 686
Query: 89 NPA*RSRIIQNRIPTRKSRNWKR 21
+PA RS ++R P R+ R+ R
Sbjct: 687 SPARRSGRSRSRTPARRGRSRSR 709
>AF490258-1|AAO85466.1| 667|Homo sapiens XTP9 protein.
Length = 667
Score = 30.3 bits (65), Expect = 5.4
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 290 IGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 111
+G++G AER + VKE +S A R A PP+ + V +++G +
Sbjct: 432 LGRSGAPAEREAEPRVKESRSPAKEEAAKMPAR--ASPPHSKAAPGDVKVKEERGEDEAS 489
Query: 110 LSPSRWVNPA 81
P+ ++PA
Sbjct: 490 EPPAGGLHPA 499
>D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein.
Length = 215
Score = 29.9 bits (64), Expect = 7.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 503 KNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
K + + K+K E+EG + + D E E+ E +E++D D
Sbjct: 172 KKGVVKAEKSKKKKEEEEGEEDEEDEEEEEDEEDEDEEEDDDD 214
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 7.2
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 376 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 433
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTAD--PPNIQREKERVWKNQ 135
H S +N R++ +E K + K+ K R+ + ++++ K+R
Sbjct: 434 KHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPS 493
Query: 134 KKGTASSRLSPSR 96
K+ + S R
Sbjct: 494 KEKSRKRSRSKER 506
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 7.2
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 376 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 433
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTAD--PPNIQREKERVWKNQ 135
H S +N R++ +E K + K+ K R+ + ++++ K+R
Sbjct: 434 KHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPS 493
Query: 134 KKGTASSRLSPSR 96
K+ + S R
Sbjct: 494 KEKSRKRSRSKER 506
>BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for
IMAGE:3538108) protein.
Length = 474
Score = 29.9 bits (64), Expect = 7.2
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 376 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 433
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKR 192
H S +N R++ +E K K +K K K+
Sbjct: 434 KHRSRSRSRNAGKRSRSRSKEKSSKHKKKKKKKNQKKKK 472
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 29.9 bits (64), Expect = 7.2
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 265 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 322
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTAD--PPNIQREKERVWKNQ 135
H S +N R++ +E K + K+ K R+ + ++++ K+R
Sbjct: 323 KHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPS 382
Query: 134 KKGTASSRLSPSR 96
K+ + S R
Sbjct: 383 KEKSRKRSRSKER 395
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 7.2
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 376 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 433
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTAD--PPNIQREKERVWKNQ 135
H S +N R++ +E K + K+ K R+ + ++++ K+R
Sbjct: 434 KHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPS 493
Query: 134 KKGTASSRLSPSR 96
K+ + S R
Sbjct: 494 KEKSRKRSRSKER 506
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 29.9 bits (64), Expect = 7.2
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 265 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 322
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTAD--PPNIQREKERVWKNQ 135
H S +N R++ +E K + K+ K R+ + ++++ K+R
Sbjct: 323 KHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPS 382
Query: 134 KKGTASSRLSPSR 96
K+ + S R
Sbjct: 383 KEKSRKRSRSKER 395
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 7.2
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 376 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 433
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTAD--PPNIQREKERVWKNQ 135
H S +N R++ +E K + K+ K R+ + ++++ K+R
Sbjct: 434 KHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPS 493
Query: 134 KKGTASSRLSPSR 96
K+ + S R
Sbjct: 494 KEKSRKRSRSKER 506
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 29.9 bits (64), Expect = 7.2
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = -3
Query: 485 SRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXER-R 309
+ + K+ +E K R E EE+ +H+ED D R R
Sbjct: 376 NEREKERERSRERSKEQRSRGEVEEK--KHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 433
Query: 308 THDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTAD--PPNIQREKERVWKNQ 135
H S +N R++ +E K + K+ K R+ + ++++ K+R
Sbjct: 434 KHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPS 493
Query: 134 KKGTASSRLSPSR 96
K+ + S R
Sbjct: 494 KEKSRKRSRSKER 506
>AB046765-1|BAB13371.2| 968|Homo sapiens KIAA1545 protein protein.
Length = 968
Score = 29.9 bits (64), Expect = 7.2
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 290 IGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 111
+G++G AER + VKE +S A R A PP+ + V +++G +
Sbjct: 733 LGRSGAPAEREAEPRVKESRSPAKEEVAKMPAR--ASPPHSKAAPGDVKVKEERGEDEAS 790
Query: 110 LSPSRWVNPA 81
P+ ++PA
Sbjct: 791 EPPAGGLHPA 800
>U08377-1|AAA19604.1| 951|Homo sapiens protein ( Human homolog of
Drosophila splicing regulator suppressor-of-white-apricot
mRNA, complete cds. ).
Length = 951
Score = 29.5 bits (63), Expect = 9.5
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 3/145 (2%)
Frame = -3
Query: 509 EQKNXDIPSRKTKDLTLEKEGYKSDYD---RNEYEERGSEHQEDNDSDXXXXXXXXXXXX 339
E K D PS K+KD E+E K R+ R ++ + S
Sbjct: 734 EVKPPDRPSSKSKDPPREEEKEKKKKKHKKRSRTRSRSPKYHSSSKSRSRSHSKAKHSLP 793
Query: 338 XXXXXXXERRTHDKFSIGKNGISAERTKQREVKEKKSKANMRKTTKGKRTTADPPNIQRE 159
R+ + S + S ER ++ + + KRT + P+ +++
Sbjct: 794 SAYRTVRRSRSRSR-SPRRRAHSPERRREERSVPTAYRVSRSPGASRKRTRSRSPHEKKK 852
Query: 158 KERVWKNQKKGTASSRLSPSRWVNP 84
K R K S +SPS+ P
Sbjct: 853 KRRSRSRTKSKARSQSVSPSKQAAP 877
>M98452-1|AAA35696.1| 356|Homo sapiens calnexin protein.
Length = 356
Score = 29.5 bits (63), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
+TS E K D P K+ EKE K D E E E ++ +D++
Sbjct: 272 QTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAE 321
>M94859-1|AAA21749.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 29.5 bits (63), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
+TS E K D P K+ EKE K D E E E ++ +D++
Sbjct: 508 QTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAE 557
>L18887-1|AAA21013.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 29.5 bits (63), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
+TS E K D P K+ EKE K D E E E ++ +D++
Sbjct: 508 QTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAE 557
>L10284-1|AAA36125.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 29.5 bits (63), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
+TS E K D P K+ EKE K D E E E ++ +D++
Sbjct: 508 QTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAE 557
>BC042843-1|AAH42843.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 29.5 bits (63), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
+TS E K D P K+ EKE K D E E E ++ +D++
Sbjct: 508 QTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAE 557
>BC003552-1|AAH03552.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 29.5 bits (63), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
+TS E K D P K+ EKE K D E E E ++ +D++
Sbjct: 508 QTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAE 557
>AJ271880-1|CAB72137.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 29.5 bits (63), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 524 KTSSREQKNXDIPSRKTKDLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 375
+TS E K D P K+ EKE K D E E E ++ +D++
Sbjct: 508 QTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAE 557
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,862,392
Number of Sequences: 237096
Number of extensions: 847331
Number of successful extensions: 3817
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3728
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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