Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0365.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   2.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.9  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 362 VSQ*CYCFCYHSPIYIEHNMLLY 294
           +SQ C    YHSP+   H ++ +
Sbjct: 32  ISQGCKACGYHSPLESNHKLVTF 54


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 377 LIHYNVSQ*CYCFCYHS 327
           LI +N     +C+CY+S
Sbjct: 543 LIQFNTIVFAFCYCYYS 559



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 377 LIHYNVSQ*CYCFCYHS 327
           LI +N     +C+CY++
Sbjct: 262 LIQFNTIVFSFCYCYYN 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,736
Number of Sequences: 336
Number of extensions: 2294
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)