Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0365.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   4.1  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    26   5.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.1  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   9.4  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 QHLTQLWGVDLESADNTIIHRFITFV 277
           +H+T+  G+DLE A N   H  + F+
Sbjct: 339 RHMTEFTGLDLEMAFNEHYHEVMEFI 364


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 594 KXGVXGXVTQXGTGGRFXELIKYLK 520
           K  V G     GTGG F  + KYLK
Sbjct: 179 KGTVDGFTCSTGTGGTFAGVTKYLK 203


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 410 FFSRSLHALHMLIHYNVSQ*CYCFCYHS 327
           F   S+  L  L  YNV    Y +CYHS
Sbjct: 170 FILHSMVILMKLHSYNVVNGWYSYCYHS 197


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 154 HISIKVPDFVDSTRHTTLDTTMGR 225
           HI  +  DF+D+T   T  T MG+
Sbjct: 230 HIQQETQDFIDATHFPTYVTPMGK 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,337
Number of Sequences: 5004
Number of extensions: 34669
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)