Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0364.Seq
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     26   9.3  
07_03_1109 - 24044583-24045218                                         26   9.3  
06_03_1330 - 29375494-29376912                                         26   9.3  

>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 185 RCSSCFWSTPCSRRMVCPGTR 123
           RC  C    P   R  CPG+R
Sbjct: 82  RCKECLARAPAGVRQECPGSR 102



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 182 CSSCFWSTPCSRRMVCPGTR*VE 114
           C  C    P   + VCPG+R V+
Sbjct: 277 CKKCLAGAPAGIKQVCPGSRTVK 299


>07_03_1109 - 24044583-24045218
          Length = 211

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 217 MKPLAPVFHSSLQDRSNYLW 276
           + PLAPVFH  +++R++ L+
Sbjct: 165 LPPLAPVFHQVVKNRNSLLY 184


>06_03_1330 - 29375494-29376912
          Length = 472

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 200 PTCCXRCSSCFWSTPCSRRMV 138
           P CC    +C  S PCS+ +V
Sbjct: 305 PPCCCSGRACSMSIPCSKYLV 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,431,729
Number of Sequences: 37544
Number of extensions: 77361
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)