Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0364.Seq
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  28   2.4  
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)                26   9.7  
SB_38532| Best HMM Match : CRAM_rpt (HMM E-Value=2.1e-29)              26   9.7  

>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 145 LLEQGVLQKXELQRXQXVGRYXQPMKPLAPVFHSSLQD 258
           L  QGV+Q+ E      VGRY +P   L P   S+L++
Sbjct: 430 LESQGVVQRPEDIGFADVGRYSKPQPSLMPNVDSTLRN 467


>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 348 FYRDPEESEKD 316
           FYRDPEE+EK+
Sbjct: 203 FYRDPEEAEKE 213


>SB_38532| Best HMM Match : CRAM_rpt (HMM E-Value=2.1e-29)
          Length = 263

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 1   LSCNIINQCRVFMQHSSLE 57
           +SCNI+ QC + MQH++++
Sbjct: 231 ISCNIMQQCSI-MQHATVQ 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,354,065
Number of Sequences: 59808
Number of extensions: 90296
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)