Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0364.Seq
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    27   3.7  
U80842-13|AAB37943.1|  208|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    26   8.5  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    26   8.5  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    26   8.5  

>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 194 CCXRCSSCFWSTPCSRRMVCP 132
           CC     CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U80842-13|AAB37943.1|  208|Caenorhabditis elegans Hypothetical
           protein ZC239.2 protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 65  WIRSRLECCINTLHWLI 15
           WIR R+   +N+ HWLI
Sbjct: 138 WIRERILNIVNSTHWLI 154


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 206 YRPTCCXRCSSCFWSTPCSRRMVC 135
           YR  C   CS CF+S   S    C
Sbjct: 240 YRSVCPKSCSQCFYSNSTSSYECC 263


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 206 YRPTCCXRCSSCFWSTPCSRRMVC 135
           YR  C   CS CF+S   S    C
Sbjct: 240 YRSVCPKSCSQCFYSNSTSSYECC 263


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 206 YRPTCCXRCSSCFWSTPCSRRMVC 135
           YR  C   CS CF+S   S    C
Sbjct: 291 YRSVCPKSCSQCFYSNSTSSYECC 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,382,268
Number of Sequences: 27780
Number of extensions: 66252
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)