Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0364.Seq
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   9.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 41  CINTLHWLIILH 6
           C N ++W+I LH
Sbjct: 418 CFNLMYWIIYLH 429


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 41  CINTLHWLIILH 6
           C N ++W+I LH
Sbjct: 418 CFNLMYWIIYLH 429


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 66  VDPLKTGVLHK 34
           VDP +TG  HK
Sbjct: 165 VDPFRTGFEHK 175


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 66  VDPLKTGVLHK 34
           VDP +TG  HK
Sbjct: 165 VDPFRTGFEHK 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,055
Number of Sequences: 438
Number of extensions: 977
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)