Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0362.Seq
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   5.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   5.5  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    24   7.3  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    24   7.3  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/51 (25%), Positives = 18/51 (35%)
 Frame = +1

Query: 142 PVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSSTGSPVTLIQTXTAXXP 294
           P T + T T   P   +        PT    S ++   P T + T T   P
Sbjct: 86  PTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPP 136



 Score = 23.4 bits (48), Expect = 9.6
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
 Frame = +1

Query: 97  TVPTVVMEVXHPPAVPVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSSTGSPVTLIQT 276
           TVP            P T + T T   P    V +     P     + ++   P T + T
Sbjct: 83  TVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNT 142

Query: 277 XTAXXP-VHXAVASLMDTVS 333
            T   P  H    S + T +
Sbjct: 143 TTVVPPTTHANTTSFVPTTT 162


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 130 PPAVPVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSSTGSPVT 264
           PPA PV  +     R        +   +AP     S SS+ +PVT
Sbjct: 187 PPAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSRSSSANPVT 231


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 105 WNCIHKCYXRRMY 67
           W+C+ KC+  ++Y
Sbjct: 111 WDCLQKCFDAKLY 123


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = -1

Query: 153 QCYWNCRWMXHFHHDCWNCIHKCYXRRMY*ILRCLS--LHQLCW 28
           +C+ +   + H HH  W+ I  C     + +L  L     Q  W
Sbjct: 59  RCFLHNPKISHQHHSFWSLIEGCLEALQFGLLAILQGLFSQFAW 102


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
 Frame = +1

Query: 7   VYXPPAVPA-----QLMQAQTA*DLVHPAXVALMDTVPTV--VMEVXHPPAVPVTLIQTQ 165
           V+ PPA P         Q   A  +     V     VP V   + V  PP  PV      
Sbjct: 529 VHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPS 588

Query: 166 TARDPVHPVV 195
             + PV PVV
Sbjct: 589 VPQPPVAPVV 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 960,065
Number of Sequences: 5004
Number of extensions: 14248
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)