Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0362.Seq
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0310 + 2209084-2209554 30 0.53
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 27 2.8
01_05_0648 + 23915469-23915898,23916551-23916619,23916956-239173... 27 3.8
07_03_1788 + 29523216-29524867,29525048-29525075 27 5.0
07_01_0312 + 2214050-2214556 27 5.0
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 27 5.0
03_06_0711 - 35682293-35682952 27 5.0
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 26 6.6
06_02_0031 + 10769375-10769785 26 8.7
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 26 8.7
>07_01_0310 + 2209084-2209554
Length = 156
Score = 29.9 bits (64), Expect = 0.53
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 16 PPAVPAQLMQAQTA*DLVHPAXVALMDTVPTVVMEVXHP-PAVPVTLIQTQTARDPVHPV 192
PPAVPA + A + A + + VPTV P PAVP + A V V
Sbjct: 22 PPAVPAVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPAVPKVALPPMPAVPAVPTV 81
Query: 193 VAALMDTAP 219
A + P
Sbjct: 82 PAVALPPMP 90
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -1
Query: 141 NCRWMXHFHHDCWNCI--HKCYXRRMY*ILRCLSLHQLCWNCR 19
NC+ HF DC N H C + C S LCWNC+
Sbjct: 43 NCKRPGHFARDCPNVALCHACGLPG-HIAAECSS-KDLCWNCK 83
>01_05_0648 +
23915469-23915898,23916551-23916619,23916956-23917315,
23918435-23918973
Length = 465
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 257 GLPVDDTLPSRXVGAVSISAATTGCTGSR 171
G PVD+ LP+ GA AA G G R
Sbjct: 296 GSPVDEELPAAGAGAGDTEAAACGGGGGR 324
>07_03_1788 + 29523216-29524867,29525048-29525075
Length = 559
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +1
Query: 73 PAXVALMDTVPTVVMEVXHPPAVPVTLIQTQTARDPV----HPVVAALMDTAPTXRDGSV 240
PA + D V +E +PPA + L T A DP + V ++ +D V
Sbjct: 299 PAHLKDEDEVIQETVEYQYPPAADMFLQLTSVAADPFNFKGYDSVPVILSFFSKYKDSEV 358
Query: 241 SSTGSPVTLIQT 276
+T L+QT
Sbjct: 359 PATYDDKELLQT 370
>07_01_0312 + 2214050-2214556
Length = 168
Score = 26.6 bits (56), Expect = 5.0
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 19 PAVPAQLMQAQTA*DLVHPAXVALMDTVPTVVMEVXHP-PAVPVTLIQTQTARDPVHPVV 195
P VPA + A V A + M VPTV P PAVP + A P P V
Sbjct: 43 PTVPAVTLPPMPAIPAVPAATLPPMPAVPTVPNAALPPMPAVPKVALPPMPA-VPAVPTV 101
Query: 196 AAL 204
A+
Sbjct: 102 PAV 104
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 130 PPAVPVTLIQTQTARDPVHPVVAALMDTAP 219
PPA+ V + T R P+H ++A L P
Sbjct: 60 PPALDVCTLSFPTKRQPIHRLLARLAPADP 89
>03_06_0711 - 35682293-35682952
Length = 219
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 130 PPAVPVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSSTGSPVTLIQTXTAXXPVH 300
PPA T T A + +HP AAL + P S ++ SP +T P H
Sbjct: 32 PPASAPTA-STPAADERLHPADAALAPSQPPSEASSSAAALSPPAPPETSPLPAPSH 87
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 76 AXVALMDTVPTVVMEVXHPPAVPVTLIQTQTA--RDPVHPVVAALMD 210
A VA +D V V+ V P +P +++ A +DP PV+AA D
Sbjct: 71 AGVAAVDGVEAVLRRV--PETLPPGVLEKMQAPAKDPAVPVIAAAAD 115
>06_02_0031 + 10769375-10769785
Length = 136
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 169 ARDPVHPVVAALMDTAPTXRDGSVSSTG 252
A+ P H V A L+ TAP+ + ++TG
Sbjct: 91 AQTPPHQVAALLISTAPSAMEIKAAATG 118
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +1
Query: 61 DLVHPAXVALMDTVPTVVMEVXHPPAVPVTLIQTQTARDPVHPVVAALMDTAP 219
+L A D V P PVT+ T A +PV P + + T P
Sbjct: 231 ELAAAARTTARDVFAPVTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNP 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,949,756
Number of Sequences: 37544
Number of extensions: 109015
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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