Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0362.Seq
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 31 0.24
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 31 0.24
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 30 0.42
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.73
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 28 2.2
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0) 27 3.9
SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6) 27 5.1
SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13) 26 6.8
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 26 6.8
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17) 26 6.8
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 26 6.8
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 26 9.0
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 26 9.0
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 26 9.0
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/70 (27%), Positives = 26/70 (37%)
Frame = -1
Query: 210 IHKCCYHRMYWIPRCLSLNQCYWNCRWMXHFHHDCWNCIHKCYXRRMY*ILRCLSLHQLC 31
IH C + + R ++ C CRW D C C R I R +H+
Sbjct: 125 IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCK 180
Query: 30 WNCRWXIHFQ 1
CRW + Q
Sbjct: 181 STCRWQLDRQ 190
Score = 29.1 bits (62), Expect = 0.96
Identities = 18/70 (25%), Positives = 25/70 (35%)
Frame = -1
Query: 210 IHKCCYHRMYWIPRCLSLNQCYWNCRWMXHFHHDCWNCIHKCYXRRMY*ILRCLSLHQLC 31
IH C + + R ++ C CRW D C C R + R +H
Sbjct: 91 IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCK 146
Query: 30 WNCRWXIHFQ 1
CRW + Q
Sbjct: 147 STCRWRLDRQ 156
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/70 (25%), Positives = 25/70 (35%)
Frame = -1
Query: 210 IHKCCYHRMYWIPRCLSLNQCYWNCRWMXHFHHDCWNCIHKCYXRRMY*ILRCLSLHQLC 31
IH C + + R ++ C CRW D C C R + R +H
Sbjct: 74 IHTCKSTCPWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCK 129
Query: 30 WNCRWXIHFQ 1
CRW + Q
Sbjct: 130 STCRWRLDRQ 139
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 31.1 bits (67), Expect = 0.24
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 222 CWSCIHKCCYHRMYWIPRCLSLNQCYWNCRWMXHFHHDCWNCIHKCYXRR 73
C C H+ CY+R + C + ++ C H++H C+ + CY R
Sbjct: 23 CCYCHHRYCYYRHHHY--CWYRHHYHYPC--YRHYYHRCYRHHYCCYRHR 68
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 150 CYWNCRWMXHFHHD-CWNCIHKCYXRRMY*ILRCLSLHQLCWNCR 19
CY + R+ + HH CW H Y + RC H C+ R
Sbjct: 24 CYCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHYCCYRHR 68
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 30.3 bits (65), Expect = 0.42
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -1
Query: 222 CWSCIHKCCYHRMYWIPRCLSLNQCYW-NCRWMXHFHHDCWNCIHKC 85
C+ + CY+ Y+ C CY+ C + H ++ C+ C C
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYYCCCSC 522
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 29.5 bits (63), Expect = 0.73
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = +1
Query: 70 HPAXVALMDTVPTVVMEVXHPPAVPVTLIQTQTARDPVH-PVVAALMDTAP--TXRDGSV 240
HP VA P+ V H PA P L P+H P AA A G V
Sbjct: 275 HPIPVATSKVPPSGVSSAPHKPAQPGLLAHFSQTHSPLHMPTSAAAGSIAQGGIVSGGVV 334
Query: 241 SSTGSP 258
S G P
Sbjct: 335 SMGGQP 340
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Frame = +1
Query: 103 PTVVMEVXHPPAVPVTLIQTQTARDPVHPVVAALMDTA---PTXRDGSVSSTGSPVTLIQ 273
PT ++E P T+ +T T + P T PT + ++T P T+ +
Sbjct: 9 PTTIIETTTTTEEPTTITETTTTKTTEEPTTITETTTTTEEPTTITETTTTTEEPTTITE 68
Query: 274 TXTAXXPVHXAVASLMDTVSTV 339
T + +T +T+
Sbjct: 69 ITTTTEEPTTTTTTAAETPTTI 90
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 27.9 bits (59), Expect = 2.2
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 73 PAXVALMDTVP-TVVMEVXHPPAVPVTLIQTQTARDPVH-PVVAALMDTAPTXRDGSVSS 246
P V ++DT T V H P V VTL++ +A + VH P+V L+ V
Sbjct: 56 PVLVKILDTGKVTSAKVVVHIPLV-VTLLKATSAEEVVHIPLVVTLLKVTSAK---VVVH 111
Query: 247 TGSPVTLIQTXTAXXPVH 300
VTL++ +A VH
Sbjct: 112 IPLVVTLVEVTSAKVMVH 129
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 171 RCLSLNQCYWNCRWMXHFHHDCWNCI--HKCYXRRMY 67
RC+ +N+C N W HDC N + ++C R Y
Sbjct: 2143 RCIDINECERNNGWC---EHDCINILGTYRCRCRDGY 2176
>SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)
Length = 754
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -1
Query: 240 YTSITXCWSCIHKCCYHRMYWIPRCLSLNQCY 145
Y I C +H CCY W+ S CY
Sbjct: 78 YAKIFNCEEALHPCCYIEKNWLAEKYS-GGCY 108
>SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 115 MEVXHPPAVPVTLIQT-QTARD-PVHPVVAALMDTAP 219
ME P + + +T +TA D PVHP+ MDT P
Sbjct: 1 MEESEQPKIASEVEETPETASDLPVHPLAPVSMDTIP 37
>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 165 LSLNQCYWNCRWMXHFHHDCWNCIHKCYXRRMY*ILRCLSLHQLCWNCRWXIH 7
LS+++ Y C + H C + IH+ R+Y + C S+ CR IH
Sbjct: 269 LSVDRSYIVCLSIGHTQSVCRSVIHRMSVDRLY--IVCQSIGHTSSVCRSVIH 319
>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
Length = 288
Score = 26.6 bits (56), Expect = 5.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -1
Query: 300 MNWXPRCXSLNQCYW--TAGG*YTSITX--CWSCI--HKC-CYHRMYWIPRCLSLNQC 148
MN RC ++N C T G +T C C+ + C C M PRC+++N C
Sbjct: 214 MNGCARCVTMNGCARCVTMNGCARCVTMNGCARCVTMNGCACCVTMNGYPRCVTMNGC 271
>SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)
Length = 626
Score = 26.2 bits (55), Expect = 6.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 139 VPVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSSTGSPVTLIQTXTAXXPVHXAVASL 318
VPV +QT + V M+T+P G + +P++ TA P H V SL
Sbjct: 378 VPVVPLQTGGVLSVQNSVT---MNTSPVYSTGHATPLNTPLSAHVNGTAVTPNHIQVVSL 434
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 127 HPPAVPVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSSTGSP 258
HP +PVTL Q A PV P + A + + + SST +P
Sbjct: 291 HPATLPVTLFTPQAA--PVTPPMGAQLPETEQPQMVAPSSTVTP 332
>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
Length = 1470
Score = 26.2 bits (55), Expect = 6.8
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +1
Query: 85 ALMDTVPTVVMEVXHPPAVPVTLIQTQTARDP-VHPVVAALMDTAPTXRDGSVSSTGSPV 261
AL T V E PA V + + + P + +A + T P + SV T +P
Sbjct: 791 ALDKTGSLPVSETMEQPAPTVKGLDSLNSLVPQLGTTIATVGLTTPAAKPSSVKPTSNPA 850
Query: 262 TLIQTXTAXXP 294
T++ T P
Sbjct: 851 TVLSDGTTENP 861
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 73 PAXVALMDTVPTVVMEVXHPPAVPVTLIQTQTARDPVHPVVAALMDTAP 219
P V +DT+P VV + P V L R P V +DT P
Sbjct: 238 PRVVTRLDTLPRVVTRLDTLPRVVTRLDTLPRTRLDTLPRVVTRLDTLP 286
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 133 PAVPVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSSTGSPV 261
P + L+Q Q V PV+A + P G++ G+P+
Sbjct: 175 PQLAYALLQAQVVMKIVDPVIAQSILHRPNEMPGAIQPGGAPL 217
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 171 RCLSLNQCYWNCRWMXHFHHDCWNCI--HKCYXRRMY 67
RC+ +N+C N W H+C N I ++C R Y
Sbjct: 432 RCVDINECKRNNGWC---EHECINIIGTYRCRCRDGY 465
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 25.8 bits (54), Expect = 9.0
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Frame = +1
Query: 31 AQLMQAQTA*DLVHPAXVALMDTVPTV-VMEVXHPPAVPVTLIQTQTARDPVHPVV-AAL 204
A + +A T + V T+ TV + P VT T + V P L
Sbjct: 443 APVAEAGTPSFVAASTDVTQSTTIATVNIKSASVLPPTAVTQSTKITLANSVTPSTNVTL 502
Query: 205 MDTAPTXRDGSVSSTGSPVTLIQTXTAXXP 294
+T P D ++S+T P TL+ A P
Sbjct: 503 ANTVPPSNDVTLSNTLPPFTLVTVTNAVTP 532
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,603,918
Number of Sequences: 59808
Number of extensions: 130682
Number of successful extensions: 281
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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