Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0362.Seq
         (339 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens ...    33   0.17 
BC117255-1|AAI17256.1| 1048|Homo sapiens Sin3A-associated protei...    30   1.6  
AY220791-1|AAO63591.1| 1048|Homo sapiens SIN3A-associated protei...    30   1.6  
AK131371-1|BAD18522.1| 1390|Homo sapiens protein ( Homo sapiens ...    29   3.7  
AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens ...    28   6.4  
AC012306-2|AAY14878.1|  732|Homo sapiens unknown protein.              28   8.5  

>AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
           GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
          Length = 710

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
 Frame = +1

Query: 16  PPAVPAQLMQAQTA*DLVHPAXVALMDTVPTVVMEVXHPPAVPVTLIQTQTARD------ 177
           PPAV A +   +    ++        D+     + + HPP+  +++ +   +RD      
Sbjct: 260 PPAVVATVSATRAQSPVITTTAAHATDSALRPTLSIQHPPSAAISIQRPAQSRDVTTRIT 319

Query: 178 -PVHPVVAALMDTAPTXRDGSVSSTGSPV 261
            P HP +        T    ++ STG+PV
Sbjct: 320 LPSHPALGTPKQQLHTMAQKTIFSTGTPV 348


>BC117255-1|AAI17256.1| 1048|Homo sapiens Sin3A-associated protein,
           130kDa protein.
          Length = 1048

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
 Frame = +1

Query: 16  PPAVPAQLMQAQTA*DLVHPAXVALMDT-VPTVVMEVXHPPAVPVTLIQTQTARD----- 177
           PPAV A +   +    ++        D+ +    + + HPP+  +++ +   +RD     
Sbjct: 286 PPAVVATVSATRAQSPVITTTAAHATDSALSRPTLSIQHPPSAAISIQRPAQSRDVTTRI 345

Query: 178 --PVHPVVAALMDTAPTXRDGSVSSTGSPV 261
             P HP +        T    ++ STG+PV
Sbjct: 346 TLPSHPALGTPKQQLHTMAQKTIFSTGTPV 375


>AY220791-1|AAO63591.1| 1048|Homo sapiens SIN3A-associated protein
           130 protein.
          Length = 1048

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
 Frame = +1

Query: 16  PPAVPAQLMQAQTA*DLVHPAXVALMDT-VPTVVMEVXHPPAVPVTLIQTQTARD----- 177
           PPAV A +   +    ++        D+ +    + + HPP+  +++ +   +RD     
Sbjct: 286 PPAVVATVSATRAQSPVITTTAAHATDSALSRPTLSIQHPPSAAISIQRPAQSRDVTTRI 345

Query: 178 --PVHPVVAALMDTAPTXRDGSVSSTGSPV 261
             P HP +        T    ++ STG+PV
Sbjct: 346 TLPSHPALGTPKQQLHTMAQKTIFSTGTPV 375


>AK131371-1|BAD18522.1| 1390|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16420 fis, clone BRACE3003053. ).
          Length = 1390

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
 Frame = +1

Query: 16  PPAVPAQLMQAQTA*DLVHPAXVALMDTVPTVVMEVXHPPAVPVTLIQTQTARDPVH--- 186
           PP    +L +      L+H     L+ T   V     H   +P  + ++ T   P     
Sbjct: 132 PPKSRVELGKIHFKKHLLHVTSRPLLATTTAVASPPTHAAPLPAVIAESTTVDSPPSSPP 191

Query: 187 ---PVVAALMDTAPTXRDGSVSSTGSPVTLIQTXTAXXPVHXAVASLMD 324
              P   A   ++P      V+   +P+T++       PV  AV SL +
Sbjct: 192 PPPPPAQATTLSSPAPVTEPVALPHTPITVLMAAPVPLPVDVAVRSLKE 240


>AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25557 fis, clone JTH02756. ).
          Length = 485

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 88  LMDTVPTVVMEVXHPPAVPVTLIQTQTA 171
           ++ T+PT++M     P V VT+IQT  A
Sbjct: 388 ILRTMPTLMMRTEDRPKVAVTMIQTAAA 415


>AC012306-2|AAY14878.1|  732|Homo sapiens unknown protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = +1

Query: 115 MEVXHPPAVPVTLIQTQTARD-------PVHPVVAALMDTAPTXRDGSVSSTGSPV 261
           + + HPP+  +++ +   +RD       P HP +        T    ++ STG+PV
Sbjct: 4   LSIQHPPSAAISIQRPAQSRDVTTRITLPSHPALGTPKQQLHTMAQKTIFSTGTPV 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,253,604
Number of Sequences: 237096
Number of extensions: 619069
Number of successful extensions: 1283
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)