Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0362.Seq
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    29   0.015
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    29   0.015
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   9.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.4  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 29.1 bits (62), Expect = 0.015
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 222 CWSCIHKCCYHRMYWIPRCLS-LNQCYWNCRWMXHFHHDCWNCIHKCYXRRMY*ILR 55
           C +CIH   +  ++W+  C S +N C +   +   F     + I KC+ +R    LR
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 90


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 0.015
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 222 CWSCIHKCCYHRMYWIPRCLS-LNQCYWNCRWMXHFHHDCWNCIHKCYXRRMY*ILR 55
           C +CIH   +  ++W+  C S +N C +   +   F     + I KC+ +R    LR
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 538


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 130 PPAVPVTLIQTQTARDPVHPVVAALMDTAPTXRD---GSVSSTGSPVTLIQ 273
           PP+VPV      TA   + P +AA    A    D    + S  GSP   +Q
Sbjct: 54  PPSVPVGSAVAGTAGGALFPGMAAAGKGAARSDDWLANANSPVGSPSAALQ 104


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 10/40 (25%), Positives = 14/40 (35%)
 Frame = +1

Query: 127 HPPAVPVTLIQTQTARDPVHPVVAALMDTAPTXRDGSVSS 246
           H P  P T I T T              T  T ++ S ++
Sbjct: 649 HEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATT 688



 Score = 19.8 bits (39), Expect = 9.4
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 241 SSTGSPVTLIQTXTAXXPVHXAVASLMDTVST 336
           SST  P T+  T T         A+   T +T
Sbjct: 99  SSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -1

Query: 210 IHKCCYHRMYW 178
           IH C   R YW
Sbjct: 81  IHPCSSFRFYW 91


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -1

Query: 210 IHKCCYHRMYW 178
           IH C   R YW
Sbjct: 81  IHPCSSFRFYW 91


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -1

Query: 210 IHKCCYHRMYW 178
           IH C   R YW
Sbjct: 81  IHPCSSFRFYW 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,420
Number of Sequences: 438
Number of extensions: 976
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)