Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0362.Seq
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    31   0.15 
At3g60930.1 68416.m06816 expressed protein                             27   3.2  
At1g69280.1 68414.m07943 expressed protein                             27   4.2  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    26   5.6  
At1g05890.1 68414.m00617 zinc finger protein-related contains lo...    26   5.6  

>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -1

Query: 306 RRMNWXPRCXSLNQCYWTAGG*YTSITXCWSCIHKCCYHRMY-WIPR-CLSLNQCYWNCR 133
           R+  W P         W     Y  I  C  C   C +H+++ W+ + C+   + +W  +
Sbjct: 267 RKRLWPPLAFGTAVMSW-----YEHIGRC-VCFIICKHHKIWEWLIKLCIGKREIHWKIK 320

Query: 132 WMX-HFHHDCWNCIH 91
            +  H HH  W+ +H
Sbjct: 321 DITRHTHHSAWHSMH 335


>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 163 QTARDPVHPVVAALMDTAPTXRDGSVSSTGSPVTLI 270
           + +RD V+P  A  +D AP    G+  S  +P  ++
Sbjct: 446 EASRDGVNPYTAGPVDAAPAEAQGAEPSAAAPEAVL 481


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
 Frame = -1

Query: 222 CWSCIH-KCCYHRMYWIPR---CLSLNQCYW-------NCRWMXHFHHDCWNC 97
           C+SC     C +  +   R   C   + C W       +C W+   H  CW+C
Sbjct: 311 CFSCCRLPSCGYNFFCCKRLKCCPCFSWCRWPSCDYNSSCGWLFCCHWSCWSC 363


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 73  PAXVALMDTVPTVVMEVXHPPAVPVTLIQTQTARDPVHPVVAALMDTA 216
           P   A   T  T  +    PPA PVT     T   P  P VA ++  A
Sbjct: 47  PTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPA 94


>At1g05890.1 68414.m00617 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 552

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 54  CLSLHQLCWNCRWXIH 7
           CL  H  CWNC    H
Sbjct: 243 CLCSHSFCWNCTEEAH 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,233,383
Number of Sequences: 28952
Number of extensions: 79883
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)