Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0360.Seq
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    45   3e-07
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.2  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   7.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   9.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 45.2 bits (102), Expect = 3e-07
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTK-EDSALFYDLKQVL 302
           DV  VI Y + K+I+   HRIG TG  G  GKA SF  + +D  L  DL ++L
Sbjct: 477 DVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQDRNLASDLAKIL 529


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 198 YHLFTSFLCYDCPW 239
           YH  +   CYDCP+
Sbjct: 66  YHTLSK-ACYDCPY 78


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 198 YHLFTSFLCYDCPWL 242
           Y +  + L YD PW+
Sbjct: 302 YQIIKNQLVYDVPWI 316


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 264 ISSGGHVDTELANKTCF 314
           + +GG V+T +    CF
Sbjct: 515 LQTGGKVETSICKNFCF 531


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,720
Number of Sequences: 336
Number of extensions: 1543
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)