Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0360.Seq
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    73   2e-14
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    46   4e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    45   5e-06
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    41   8e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    40   1e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    39   3e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    38   6e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    37   0.001
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    36   0.002
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    36   0.004
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    34   0.012
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    32   0.048
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    31   0.064
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    29   0.26 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   5.6  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   7.3  

>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 34/67 (50%), Positives = 48/67 (71%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
           +VS+V+ Y MAK+IE  THRIG TG AGK G A++F+  ED+ ++YDL+ +L  S+ +  
Sbjct: 584 NVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHI 643

Query: 277 PPELMNH 257
           P EL NH
Sbjct: 644 PDELRNH 650


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
           VS+VI Y +    E   HRIG +G  G+ G A++FVT ED  +  D++Q
Sbjct: 329 VSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQ 377


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 25/68 (36%), Positives = 37/68 (54%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
           V MVI +   +++    HRIG TG AG  G+A++F TKED   +  L   ++ SS    P
Sbjct: 357 VKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGE-YIKLIAGVMRSSGCEVP 415

Query: 274 PELMNHPR 251
             +M  P+
Sbjct: 416 NWVMALPK 423


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
           + +V+ Y     +E   HR+G TG AG  G A++F+T E      D+ + L  S     P
Sbjct: 737 LQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSK-QPVP 795

Query: 274 PEL 266
            EL
Sbjct: 796 KEL 798


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
           VS+VI Y +    E   HRIG  G  G+ G +++FVT +D  +  +++Q
Sbjct: 327 VSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQ 375


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
           V +VI      TIE   HRIG TG A   G A++F T +D +   +L  VL
Sbjct: 485 VQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVL 535


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
           V++VI +   K  E   HRIG +G  G  G A+SF++  D    Y ++   L + +   P
Sbjct: 350 VNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENE-LGTEIQPIP 408

Query: 274 PEL 266
           P +
Sbjct: 409 PSI 411


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFV 347
           +V+ V+ + M    +   HRIG T  AGK G AMSFV
Sbjct: 394 NVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLK 311
           V +VI + + +  +   HR+G T  AG+ G+++S VT+ D  L + ++
Sbjct: 327 VQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIE 374


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
           V +VI Y +    +   HR+G T  AG+ GK+++ VT+ D   F  ++  +
Sbjct: 354 VDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATI 404


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 33.9 bits (74), Expect = 0.012
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 445 VIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
           VI Y      +   HR+G T  AG+ G A S V  ED+    DL+  L
Sbjct: 418 VINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFL 465


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 31.9 bits (69), Expect = 0.048
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKED 335
           + +VI Y    T E   HR+G T  AG+ G+A++   + D
Sbjct: 573 IEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGD 612


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 31.5 bits (68), Expect = 0.064
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLL 299
           +++ V+        +   HRIG TG AGK G+A   + +++      +K + L
Sbjct: 361 NITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPL 413


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 445 VIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
           VI Y    ++    HRIG T  AG+ G A + V   +   F  L + L
Sbjct: 509 VINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQL 556


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 418  IEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCPP 272
            +EG    +  TG  G  G    F+ +ED   F  L+ +L       CPP
Sbjct: 1100 VEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLR----KECPP 1144


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 278 TRRYGTCQQNLLQIIEQCGVFFCNKGH 358
           TR+Y T Q    +  E+C  + C++ H
Sbjct: 85  TRQYMTLQNGKSRFCEKCQEYKCDRSH 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,287
Number of Sequences: 5004
Number of extensions: 25944
Number of successful extensions: 61
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)