Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0360.Seq
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  79   2e-15
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         39   0.002
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  38   0.005
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.005
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)               35   0.037
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         31   0.61 
SB_37351| Best HMM Match : DEAD (HMM E-Value=0)                        29   1.4  
SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)               28   3.2  

>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 38/55 (69%), Positives = 44/55 (80%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLAS 293
           DVS VI Y MAKTIE  THRIG TG AGK G A+SF+T+ DS +FYDLKQ+LL+S
Sbjct: 352 DVSHVINYDMAKTIEDYTHRIGRTGRAGKTGIAVSFLTQSDSGVFYDLKQLLLSS 406


>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 36/56 (64%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASS 290
           D++ VI Y   + IE   HR+G TG AG+ G +++F+++ED    + L ++++ ++
Sbjct: 110 DITYVINYDFPRHIEDYVHRVGRTGRAGRSGTSLTFISREDWRSAHKLIKIMVQAN 165


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
           +V+ VI Y +  TIE   HR G TG  G  G A SF+T  D  +  +LK++L
Sbjct: 400 EVTHVINYDLPDTIECYIHRCGRTGRIGHHGIATSFLTL-DCKIAEELKEML 450


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
           VS VI + M  T E   H+IG  G  G  G ++SF+      LF  L   L    V   P
Sbjct: 397 VSKVINFDMPPTYEEYVHQIGRAGRLGATGWSISFINNASKGLFLQLINKLQPMGVK-LP 455

Query: 274 PEL 266
            EL
Sbjct: 456 DEL 458


>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLK 311
           +V+ VI    A       HR+G T  AG  GK ++F+TK+D  L   L+
Sbjct: 116 NVTHVIQLDFATDAAQMLHRVGRTARAGSHGKVVNFITKDDEELVNALR 164


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 35.5 bits (78), Expect = 0.021
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 457  DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTK-EDSALFYDLKQVL 302
            DV  VI + +   I+   HRIG TG  G  GKA +F  +  D  +   L +VL
Sbjct: 1030 DVKHVINFDLPSDIDEYVHRIGRTGRIGNKGKATTFFLRGRDDKVARGLVKVL 1082


>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
          Length = 238

 Score = 34.7 bits (76), Expect = 0.037
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = -3

Query: 415 EGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
           E   HR+G T  AG+ G++++FVT+ D  L+  ++ ++
Sbjct: 127 EDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHLI 164


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKED 335
           V +V+   +    +   HR+G T  AG+ G A+S VT+ D
Sbjct: 316 VELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYD 355


>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 688

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
           ++ +V+     K ++   HR G TG AG+ G  + F   +   L   +++
Sbjct: 372 EIDLVVQCEPPKDVDAYIHRSGRTGRAGREGICIVFYKPQQEGLLQPVER 421


>SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)
          Length = 457

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 364 KAMSFVTKEDSALFYDLKQVLLASSVSTCPPELMNHPRLNISQGQS 227
           KA    TKE S    DL        ++TCP +L  HP L+I+ G S
Sbjct: 378 KARLLPTKETSVK--DLLGKYGGHYINTCPFDLTGHPALSINAGLS 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,359,957
Number of Sequences: 59808
Number of extensions: 191605
Number of successful extensions: 326
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)