Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0360.Seq
         (459 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    44   2e-06
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   1.7  
AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    23   5.1  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   6.8  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   6.8  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    22   9.0  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKE-DSALFYDLKQVLLASSVS 284
           +V+ V+ Y + K+I+   HRIG TG  G  G+A SF   E D A+  DL ++L  +  S
Sbjct: 491 NVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPEADRAMASDLVKILTQAGQS 549


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 150 NYHHGHQQVIKSTVALVLTHFKHPLLESKE 61
           +Y  GH +  ++ +A ++  FK  LLE  E
Sbjct: 289 DYMIGHMETAQNRMASIILGFKEALLEEAE 318


>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 319 DLKQVLLASSVSTCPPELMNHPRLN 245
           DL  V   +S   C  +L N+PRLN
Sbjct: 160 DLSLVPTIASAVHCGLDLTNYPRLN 184


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 144 HHGHQQVIKSTVALVLTHFKH 82
           HH H  +I+    L +TH +H
Sbjct: 720 HHPHDLLIEENNMLNMTHHQH 740


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 278 TRRYGTCQQNLLQIIEQCGVFFCNKGHSFT 367
           T+R G   + LL  +EQ G+   N+G++ T
Sbjct: 134 TKRKG---EELLNTVEQLGLIVLNRGNTST 160


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 310 QVLLASSVSTCPPELMN 260
           Q++ A  +S CPPE+ +
Sbjct: 382 QMVAAEKLSQCPPEMFD 398


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,775
Number of Sequences: 2352
Number of extensions: 6255
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39544623
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)