Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0360.Seq
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 100 4e-22
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 46 1e-05
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 44 4e-05
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 43 9e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 43 9e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 43 9e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 43 9e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 42 2e-04
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 42 2e-04
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 42 2e-04
U00066-10|AAA50744.2| 106|Caenorhabditis elegans Hypothetical p... 41 5e-04
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 40 7e-04
U13876-4|AAX88826.1| 115|Caenorhabditis elegans Initiation fact... 40 7e-04
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 40 7e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 39 0.002
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 39 0.002
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 39 0.002
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 39 0.002
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 38 0.004
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 37 0.006
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 37 0.006
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 37 0.006
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 36 0.011
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 34 0.043
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 32 0.23
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 29 1.6
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 29 1.6
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 27 8.7
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 27 8.7
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 100 bits (240), Expect = 4e-22
Identities = 44/68 (64%), Positives = 57/68 (83%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
DVS+V+ Y MAK+IE THRIG TG AGK GKA++F+T +D+A+++DLKQVL+ S VS+C
Sbjct: 641 DVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSC 700
Query: 277 PPELMNHP 254
PPEL NHP
Sbjct: 701 PPELANHP 708
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 257 PXAQHKPGTVVTKKRREEMIF 195
P AQ KPG +KKR++E +F
Sbjct: 708 PDAQSKPGVFTSKKRQDETLF 728
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
D++ V+ Y IE HR+G TG AG+ G+AMSF+ D + F L Q+L
Sbjct: 406 DITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQIL 457
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 44.4 bits (100), Expect = 4e-05
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKE-DSALFYDLKQVL 302
+ VI + M + IE HRIG TG +G+ G A +F+ K+ + ++ DLKQ+L
Sbjct: 510 IEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLL 561
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 43.2 bits (97), Expect = 9e-05
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
DV +VI Y + +I HR+G TG AGK G A+++ T D + V+ S
Sbjct: 443 DVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADMKYIKSIATVIRQSGFDV- 501
Query: 277 PPELMNHPRLN 245
P LM +++
Sbjct: 502 PEYLMEMKKVS 512
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 43.2 bits (97), Expect = 9e-05
Identities = 27/64 (42%), Positives = 33/64 (51%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
V VI Y M I+ HRIG TG G G+A SF++ ED L +L +VL S
Sbjct: 886 VDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLSELVRVL--SDADQLV 942
Query: 274 PELM 263
PE M
Sbjct: 943 PEWM 946
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 43.2 bits (97), Expect = 9e-05
Identities = 27/64 (42%), Positives = 33/64 (51%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
V VI Y M I+ HRIG TG G G+A SF++ ED L +L +VL S
Sbjct: 886 VDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLSELVRVL--SDADQLV 942
Query: 274 PELM 263
PE M
Sbjct: 943 PEWM 946
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 43.2 bits (97), Expect = 9e-05
Identities = 27/64 (42%), Positives = 33/64 (51%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
V VI Y M I+ HRIG TG G G+A SF++ ED L +L +VL S
Sbjct: 886 VDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLSELVRVL--SDADQLV 942
Query: 274 PELM 263
PE M
Sbjct: 943 PEWM 946
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V VI Y M I+ HRIG TG G G+A SF++ ED +L +L VL
Sbjct: 675 VDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS-EDCSLLSELVGVL 724
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V VI Y M I+ HRIG TG G G+A SF++ ED +L +L VL
Sbjct: 675 VDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS-EDCSLLSELVGVL 724
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V VI Y M I+ HRIG TG G G+A SF++ ED +L +L VL
Sbjct: 675 VDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS-EDCSLLSELVGVL 724
>U00066-10|AAA50744.2| 106|Caenorhabditis elegans Hypothetical
protein R12B2.6 protein.
Length = 106
Score = 40.7 bits (91), Expect = 5e-04
Identities = 16/27 (59%), Positives = 24/27 (88%)
Frame = -3
Query: 385 GXAGKXGKAMSFVTKEDSALFYDLKQV 305
G AGK GKA++F+T +D+A+++DLKQV
Sbjct: 15 GRAGKHGKAITFLTPDDTAVYFDLKQV 41
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDS 332
VS+VI Y + E HRIG +G G+ G A++FVT+ D+
Sbjct: 337 VSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDA 377
>U13876-4|AAX88826.1| 115|Caenorhabditis elegans Initiation factor
protein 1, isoformb protein.
Length = 115
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDS 332
VS+VI Y + E HRIG +G G+ G A++FVT+ D+
Sbjct: 50 VSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDA 90
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDS 332
VS+VI Y + E HRIG +G G+ G A++FVT+ D+
Sbjct: 337 VSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDA 377
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKED 335
V VI Y M I+ HRIG TG G G+A SF++ D
Sbjct: 632 VDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLAD 671
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKED 335
V VI Y M I+ HRIG TG G G+A SF++ D
Sbjct: 632 VDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLAD 671
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V +V+ + + + + HR+G + AG+ G A+SFVT+ D L ++QV+
Sbjct: 406 VDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVI 456
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V +V+ + + + + HR+G + AG+ G A+SFVT+ D L ++QV+
Sbjct: 406 VDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVI 456
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCP 275
V VI M K+I+ HR+G T AGK G+++S V +++ L LK+++ +++ T
Sbjct: 486 VQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKL---LKEIVNSNADRTLK 542
Query: 274 PELM 263
L+
Sbjct: 543 QRLV 546
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASS 290
+V VI Y + + HRIG TG G G A SF ++ + DLK +++ S+
Sbjct: 466 NVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESN 521
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASS 290
+V VI Y + + HRIG TG G G A SF ++ + DLK +++ S+
Sbjct: 450 NVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESN 505
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASS 290
+V VI Y + + HRIG TG G G A SF ++ + DLK +++ S+
Sbjct: 447 NVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESN 502
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 36.3 bits (80), Expect = 0.011
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKED 335
V MVI Y M + HR+G T AG+ G A++ VT+ D
Sbjct: 352 VDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYD 391
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 34.3 bits (75), Expect = 0.043
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 448 MVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKE 338
+V+ Y E HR+G TG AG+ G A +FV E
Sbjct: 623 LVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPE 659
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 448 MVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDS 332
MV+ E HRIG TG GK G A++ + EDS
Sbjct: 543 MVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDS 581
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 448 MVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDS 332
MV+ E HRIG TG GK G A++ + EDS
Sbjct: 568 MVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDS 606
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical protein
T07D4.4a protein.
Length = 1022
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 448 MVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDS 332
MV+ E HRIG TG GK G A++ + EDS
Sbjct: 952 MVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDS 990
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSA 329
VS V+ + +T + HR+G T G A+SF + A
Sbjct: 377 VSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERA 418
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSA 329
VS V+ + +T + HR+G T G A+SF + A
Sbjct: 444 VSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERA 485
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 403 HRIGXTGXAGKXGKAMSFVTKEDSALFYDL 314
HR+G AG+ G A+S + ++ DL
Sbjct: 351 HRVGRVARAGRSGTAISLIANDELPYLTDL 380
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 403 HRIGXTGXAGKXGKAMSFVTKEDSALFYDL 314
HR+G AG+ G A+S + ++ DL
Sbjct: 351 HRVGRVARAGRSGTAISLIANDELPYLTDL 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,469,796
Number of Sequences: 27780
Number of extensions: 142832
Number of successful extensions: 333
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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