Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0360.Seq
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       44   8e-07
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 44.0 bits (99), Expect = 8e-07
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -3

Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFV-TKEDSALFYDLKQVLLASSVS 284
           +VS VI Y + K I+   HRIG TG  G  G+A SF   +ED+ L  DL ++L  ++ S
Sbjct: 519 NVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQS 577


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 216 FLCYDCPWLMLSLGW 260
           +L Y+ PW    LGW
Sbjct: 519 YLTYEYPWWSHVLGW 533


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 216 FLCYDCPWLMLSLGW 260
           +L Y+ PW    LGW
Sbjct: 572 YLTYEYPWWSHVLGW 586


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 374 SCTTGXADTMSXAFNSLRHXVXNDH 448
           +C +G + T S     L H + N H
Sbjct: 135 ACHSGSSLTKSRLMRCLHHDIENAH 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,535
Number of Sequences: 438
Number of extensions: 2013
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)