Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0360.Seq
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 76 1e-14
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 45 3e-05
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 44 4e-05
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 44 5e-05
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 44 5e-05
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 44 5e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 44 5e-05
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 43 1e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 42 3e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 40 6e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 40 8e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 40 0.001
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 38 0.002
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 38 0.004
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 38 0.004
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.008
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.013
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 36 0.017
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 34 0.053
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 34 0.053
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.12
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 32 0.21
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 31 0.37
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 31 0.49
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 76.2 bits (179), Expect = 1e-14
Identities = 40/75 (53%), Positives = 47/75 (62%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
DV+ VI Y M K IE THRIG TG AGK G A SF+T D+ +FYDLKQ+L+ S+ S
Sbjct: 644 DVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSN-SAV 702
Query: 277 PPELMNHPRLNISQG 233
PPEL H G
Sbjct: 703 PPELARHEASRFKPG 717
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
D+ V+ Y T+E HRIG TG AG G A +F T +++ +L ++L +
Sbjct: 478 DIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAG-QVV 536
Query: 277 PPEL 266
PP L
Sbjct: 537 PPTL 540
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 44.4 bits (100), Expect = 4e-05
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
VS+VI + + E HRIG +G G+ G A++FVT++D + +D+++
Sbjct: 347 VSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 395
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
D+ V+ Y +E HRIG TG AG G+A +F +DS DL ++L ++
Sbjct: 470 DIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGAN-QRV 528
Query: 277 PPEL 266
PP++
Sbjct: 529 PPQI 532
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
D+ V+ Y +E HRIG TG AG G+A +F +DS DL ++L ++
Sbjct: 470 DIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGAN-QRV 528
Query: 277 PPEL 266
PP++
Sbjct: 529 PPQI 532
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
D+ V+ Y +E HRIG TG AG G+A +F +DS DL ++L ++
Sbjct: 470 DIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGAN-QRV 528
Query: 277 PPEL 266
PP++
Sbjct: 529 PPQI 532
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 44.0 bits (99), Expect = 5e-05
Identities = 24/52 (46%), Positives = 28/52 (53%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
DV +VI Y T E HRIG TG AGK G A +F T + L +L VL
Sbjct: 434 DVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVL 485
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
VS+VI + + E HRIG +G G+ G A++FVT +D + +D+++
Sbjct: 347 VSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQK 395
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
VS+VI + + E HRIG +G G+ G A++F+T ED + D+++
Sbjct: 349 VSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQR 397
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSAL 326
V VI Y + I+ HR+G T AG+ G A++FVT D +L
Sbjct: 481 VQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSL 523
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.9 bits (89), Expect = 8e-04
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLAS 293
++ VI Y + HRIG +G AG+ G+A++F T++D ++ +++S
Sbjct: 449 INCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSS 502
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V VI + M +++ G HRIG TG A G ++S ++ ++ F D+K L
Sbjct: 405 VHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFL 455
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
++ +V+ + E HR+G TG AG+ G A++F++++D+ DL + L
Sbjct: 682 ELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKAL 733
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
++ +V+ + E HR+G TG AG+ G A++F++++D+ DL + L
Sbjct: 844 ELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKAL 895
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
V +VI Y + + HR+G T AG+ G A+S +T+ D L + +++
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V+ V+ + + I+ HRIG TG AGK G A +F + ++ L L +++
Sbjct: 477 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELM 527
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V+ V+ + + I+ HRIG TG AGK G A +F + ++ L L +++
Sbjct: 477 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELM 527
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 36.7 bits (81), Expect = 0.008
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V+ V+ + + I+ HRIG TG AGK G A +F +++L L +++
Sbjct: 487 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELM 537
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.9 bits (79), Expect = 0.013
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -3
Query: 403 HRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPE 269
HR+G AG+ G A SFVT ED DL + L+ V P E
Sbjct: 357 HRVGRAARAGRTGCAYSFVTPEDMPYMLDL-HLFLSKPVRPAPTE 400
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 35.5 bits (78), Expect = 0.017
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDS 332
+V ++I Y + E HR G TG AGK G A+ +++ S
Sbjct: 416 NVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQS 457
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 33.9 bits (74), Expect = 0.053
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQV-LLASSVST 281
DVS+V+ + E HR+G TG GK G+ + + + +K + + S +
Sbjct: 708 DVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPP 767
Query: 280 CPPELMNHPRLNISQ 236
PE + + +SQ
Sbjct: 768 IDPEAVKRVQKGLSQ 782
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.9 bits (74), Expect = 0.053
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAM 356
+V +VI Y + E HR G TG AGK G A+
Sbjct: 428 NVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI 461
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.7 bits (71), Expect = 0.12
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQ 308
+V +VI Y + E HR G TG AGK G A+ T L++
Sbjct: 418 NVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
DVS+V+ + E HR+G TG GK G+ + + + +K L + S+
Sbjct: 406 DVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVKD--LPITKSSL 463
Query: 277 PP 272
PP
Sbjct: 464 PP 465
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 31.1 bits (67), Expect = 0.37
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 454 VSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVL 302
V +VI Y + + HR+G T AG+ G +S V + + + +++++
Sbjct: 329 VDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLI 379
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 30.7 bits (66), Expect = 0.49
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -3
Query: 457 DVSMVIXYXMAKTIEGXTHRIGXTGXAGKXGKAMSFVTKEDSALFYDLKQVLLASSVSTC 278
+V +I Y + + E HR G T A G +++ + +++ FY L + SV
Sbjct: 570 NVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVKIF 629
Query: 277 P 275
P
Sbjct: 630 P 630
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,924,155
Number of Sequences: 28952
Number of extensions: 133039
Number of successful extensions: 278
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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