Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0359.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    34   0.016
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    27   2.4  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   4.2  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   5.6  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    25   7.3  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    25   9.7  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   9.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 192 YRGIRYAEPPVGKLRFQPP 248
           + GIRYA+PPVGKLR++ P
Sbjct: 21  FTGIRYAKPPVGKLRWRRP 39


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 224 RETTIPAPKTIRQYKERVDASKEGPACPLPVPPTYYVDEXCLRINVYTPSNNVSKPXPVI 403
           + T+  +P T   YK  + A+   P C +  PP   V E    I + TP N V +P   +
Sbjct: 17  KSTSATSPIT---YKA-LHANSPLPRCRIIEPPRATVPEAVSNIIMSTPFNRVQRPKRHV 72

Query: 404 F 406
           F
Sbjct: 73  F 73


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 398 VIFYIHAGAXYSMTGRSD 451
           VIFY+H GA Y  T R++
Sbjct: 140 VIFYVHGGAHYLSTVRTN 157


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 400 DILHSRRSVXLHDGQERPGRALLLAG 477
           +I   R  + L DG +RP + +LLAG
Sbjct: 222 EINQKRGGITLSDGTKRPCKIMLLAG 247


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 224 RETTIPAPKTIRQYKERVDASKEGPACPLPVPPTYYVD 337
           R+  I   KTI+Q++ER    +   A      PTY +D
Sbjct: 55  RKEKIQMKKTIKQHEERNATQRGSDAQTQGAVPTYLLD 92


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 12  KMLLKLIFICAIVYYADAHKNNKRQTEQKPAEPDGPVTRSQSGS 143
           K +LK+  IC ++ +AD+ +   R T++       P T   + S
Sbjct: 48  KHVLKITIICILILFADSVRRVVRVTKEYDLAIAAPSTTESARS 91


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 266 KERVDASKEGPACPLPVPPTYYVDEXCLRINVYTPSNNVSK 388
           +E +D + EGP   +  PPTY        I V  P+   +K
Sbjct: 384 QELIDPTLEGPRWTVSDPPTYAKQTIDSNICVLVPTAEKNK 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,499
Number of Sequences: 5004
Number of extensions: 43480
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)