Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0359.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 29 3.2
10_08_0931 - 21647562-21649037 28 4.3
10_08_0803 + 20686550-20686850,20686940-20687051,20687803-20688175 28 4.3
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 28 4.3
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792 28 5.6
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 28 5.6
04_04_0650 + 26950912-26951397,26951552-26951728 28 5.6
04_03_0167 - 12178587-12179203,12179243-12179375,12179540-121797... 28 5.6
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 27 7.5
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 27 7.5
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 27 9.9
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 27 9.9
>06_01_0027 -
271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 245 PKTIRQYKERVDASKEGP-ACPLPVPPTY 328
PKT+ QY+ER KE C +P PP Y
Sbjct: 901 PKTMMQYRERHCPRKEELFRCLIPAPPKY 929
>10_08_0931 - 21647562-21649037
Length = 491
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 221 GRETTIPAPKTIRQYKERVDASKEGPACPLP 313
G ET +P+P R R DAS P P P
Sbjct: 209 GHETVLPSPIPWRSRSGRFDASAPSPPSPSP 239
>10_08_0803 + 20686550-20686850,20686940-20687051,20687803-20688175
Length = 261
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 358 VDSQAVFVDVVSGRDGQRAGRALFARVNAFFVLPNSFGGWNRSFPTGGSAYLM 200
V +QAVF ++ RD + F +AF NSF + S GGSA L+
Sbjct: 35 VITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTS---GGSAELI 84
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 129 SQSGSFLGSWMETRRGKQFQAYRGI--RYAEPP 221
S +GSF+ W RG+ A R I R+A+PP
Sbjct: 180 SSAGSFVWDWPSLARGEGIVAPRSIGRRFADPP 212
>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
Length = 264
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 239 PAPKTIRQYKERVDASKEGPACPLPVPPTYYVDEXCLRINVYTP 370
P+P + + +A + G + P P PPT + E +R+ P
Sbjct: 96 PSPDALNRVAAVQNADENGVSSPPPPPPTVFFLEDAVRVGESLP 139
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 439 RHGVXRSGVNVKYHRXRLRDIVTRSIHVDSQAVFVDVVSGRDGQRAGRALFARVNAFFV 263
R GV R ++VK+H L +V+ S ++ + +++SGR Q G + AF V
Sbjct: 404 RQGV-RKVLDVKFHPEGLPQLVSCSNEAPNELLLFNLLSGRATQLRGHNTKIQATAFAV 461
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 227 ETTIPAPKTIRQYKERVDASKEGPACPLPVPP 322
E P P+ Q +ER ++GPA PLPV P
Sbjct: 55 ENLPPPPQEEEQRRER-KTRRQGPAQPLPVQP 85
>04_03_0167 -
12178587-12179203,12179243-12179375,12179540-12179726,
12179800-12179963,12180016-12180234
Length = 439
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 291 SLLASTRSLYCRIVLGAGIVVSRPVAQRILCPYRPGTAFRDV 166
+L + RS+ RI+LG V +PV +R PGT ++V
Sbjct: 139 TLTSRVRSVAARIILGT--TVRKPVRRRCTWATTPGTVHKEV 178
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = +3
Query: 432 P*RAGATW---PGLTTCWTEIWC 491
P R+GA+W PGLT+ W + C
Sbjct: 216 PERSGASWHVDPGLTSAWNTLLC 238
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 239 PAPKTIRQYKERVDASKEGPACPLPVPP 322
P P + R+ + R D + PA LP+PP
Sbjct: 124 PPPVSARERQRRRDVDDDKPAIVLPLPP 151
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 233 TIPAPKTIRQYKERVDASKEGPACPLPVPPTYYVD--EXCLRINVYTPSNNVSKPXP 397
T A ++++++KE A P+ L PP ++ LR ++T S P P
Sbjct: 501 TASATQSVKEFKENSKAELSPPSTSLDTPPREKIEGTPPELRQGLFTSSPGTPSPDP 557
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 508 VVDGXXHQISVQQVVRPGQVAPARHGVXRSGVNVKYHRXRL 386
+ DG I + V G V A+H + G NV YH+ RL
Sbjct: 362 MTDGFPRDIDMMTDVTIGFVKDAKHHIPIQGFNV-YHKNRL 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,455
Number of Sequences: 37544
Number of extensions: 328939
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -