Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0359.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02580.1 68415.m00198 cytochrome P450 family protein 31 0.38
At5g15860.2 68418.m01856 expressed protein 29 2.0
At5g15860.1 68418.m01855 expressed protein 29 2.0
At1g76590.1 68414.m08912 zinc-binding family protein similar to ... 29 2.7
At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SD... 28 3.6
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c... 28 3.6
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 3.6
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 28 3.6
At2g24930.1 68415.m02981 Ulp1 protease family protein contains P... 28 4.7
At3g26300.1 68416.m03282 cytochrome P450 family protein contains... 27 6.2
At2g17580.1 68415.m02034 polynucleotide adenylyltransferase fami... 27 6.2
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-... 27 8.3
At4g28910.2 68417.m04132 expressed protein 27 8.3
At4g28910.1 68417.m04131 expressed protein 27 8.3
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai... 27 8.3
At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SD... 27 8.3
>At2g02580.1 68415.m00198 cytochrome P450 family protein
Length = 500
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 21 LKLIFICAIVYYADAHKNNKRQTEQKPAEPDGPV 122
L L+F+C I+ A HK + +Q P+ P P+
Sbjct: 7 LSLLFLCCILLAAFKHKKRRTNQQQPPSPPGFPI 40
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 329 YVDEXCLRINVYTPSNNVSKPXPVIFYIHAGA-XYSMTGRSDLAGPYYLLDRDLVLVTIN 505
Y D+ R+++Y PSNN PV+ ++ GA L G L +RD+++ ++
Sbjct: 135 YGDQPRNRLDLYLPSNN-DGLKPVVVFVTGGAWIIGYKAWGSLLG-MQLAERDIIVACLD 192
Query: 506 Y 508
Y
Sbjct: 193 Y 193
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 329 YVDEXCLRINVYTPSNNVSKPXPVIFYIHAGA-XYSMTGRSDLAGPYYLLDRDLVLVTIN 505
Y D+ R+++Y PSNN PV+ ++ GA L G L +RD+++ ++
Sbjct: 135 YGDQPRNRLDLYLPSNN-DGLKPVVVFVTGGAWIIGYKAWGSLLG-MQLAERDIIVACLD 192
Query: 506 Y 508
Y
Sbjct: 193 Y 193
>At1g76590.1 68414.m08912 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 245
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 208 YLMPL*AWNCFPRRVSIHEPKNEPDCERVTGPSGSAGFCSVCLL 77
+L+P+ N F SIH N+ +C S FCS CLL
Sbjct: 20 WLIPMLRANYFIP-CSIHAASNKSECNMFCLDCSSEAFCSYCLL 62
>At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 296
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 272 RVDASKEGPACPLPVPPTYYVDEXCLRINVYTPSNNVSKPXPVI 403
R A KEG + TY + E C++IN Y P P++
Sbjct: 108 RAGAGKEGFKWDEIITETYELTEECIKINYYGPKRMCEAFIPLL 151
>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
contains Pfam glycosyl transferase, group 1 family
protein domain PF00534; C-terminal portion similar to
mannosyltransferase GB:BAA28328 [Escherichia coli]
Length = 487
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 192 YRGIRYAEPPVGKLRFQPPKLFGNTKNALTRAKRAR 299
+ G ++AEP V KLR ++ N A + KR R
Sbjct: 422 FEGHQWAEPSVDKLRVLMRRVMSNPDEAKVKGKRGR 457
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 305 PLPVPPTYY-VDEXCLRINVYTPSNNVSKPXPVIFY 409
P P PPTYY V VY P S P P ++Y
Sbjct: 619 PPPPPPTYYAVQSPPPPPPVYYPPVTASPPPPPVYY 654
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -2
Query: 397 RXRLRDIVTRSIHVDSQAVFVDVVS-----GRDGQRAGRALFARVNAFFVLPNSFGGWNR 233
+ + D++ R +VDSQ + ++ G++G+RA L+A + A+F ++ G N+
Sbjct: 1027 KSNIEDVLERVANVDSQFMAWLTLNRRNAVGKNGKRARECLYAEIPAYF----TWDGENK 1082
Query: 232 SF 227
SF
Sbjct: 1083 SF 1084
>At2g24930.1 68415.m02981 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 926
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 75 NKRQTEQKPAEPDGPVTRSQSG-SFLGSWMETRRGKQFQAYRGIRYAEPPVGKLRFQPPK 251
N+R +KP P+ P + + + L TRRG+ + + P K+R PK
Sbjct: 516 NRRLRSRKPPSPNVPKHKKEKTLNELIQKPPTRRGRGRKPLEQPKKVPPTALKIRINKPK 575
Query: 252 LFGNTKNALTRAK 290
TK+ AK
Sbjct: 576 PSEETKSKAEEAK 588
>At3g26300.1 68416.m03282 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 500
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 18 LLKLIFICAIVYYADAHKNNKRQTEQKPAEPDGPV 122
LL LIF+ I+ HKN + P+ P P+
Sbjct: 6 LLSLIFVICILVAVFNHKNRRNYQRTPPSPPGCPI 40
>At2g17580.1 68415.m02034 polynucleotide adenylyltransferase family
protein similar to SP|P13685 Poly(A) polymerase (EC
2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 757
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 60 DAHKNNKRQTEQKPAEPDGPVTRSQSGSFLGSWMETRRGKQ 182
D+ +NN ++TE P P GP ++Q S + ++ RR K+
Sbjct: 593 DSEQNNDQETEVCPRTPSGP-AKNQDQSVV-QMLKRRRSKE 631
>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Homo sapiens] GI:5410257; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 823
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 532 YXNLKSXAVVDGXXHQISVQQVVRPGQVAPARHGVXRSGVNVKYHRXRL 386
Y NL + + H + VV G V A+H V G NV YH+ RL
Sbjct: 457 YSNLYNLKIWLLVLHVSQLSAVVTIGFVKDAKHHVDVQGFNV-YHKNRL 504
>At4g28910.2 68417.m04132 expressed protein
Length = 425
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 60 DAHKNNKRQTEQKPAEPDGPVTRSQSG 140
D KN T Q+PAEP RS SG
Sbjct: 50 DDFKNFLHPTSQRPAEPSSGSQRSDSG 76
>At4g28910.1 68417.m04131 expressed protein
Length = 425
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 60 DAHKNNKRQTEQKPAEPDGPVTRSQSG 140
D KN T Q+PAEP RS SG
Sbjct: 50 DDFKNFLHPTSQRPAEPSSGSQRSDSG 76
>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
domain-containing protein similar to BRCA1-associated
protein 2 [Homo sapiens] GI:3252872; contains Pfam
profile PF02148: Zn-finger in ubiquitin-hydrolases and
other protein
Length = 488
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 236 IPAPKTIRQYKERVDASKEGPACPLPVPP 322
I A KT+++ D +EG P+P+ P
Sbjct: 444 IEAKKTLKKMSSDTDGIREGTVLPVPISP 472
>At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 296
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 272 RVDASKEGPACPLPVPPTYYVDEXCLRINVYTPSNNVSKPXPVI 403
R KEG + TY + E C++IN Y P P++
Sbjct: 108 RAGTGKEGFKWEETITETYELAEECIKINYYGPKRMCEAFIPLL 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,915
Number of Sequences: 28952
Number of extensions: 248515
Number of successful extensions: 639
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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