Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0358.Seq
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    33   4.5  
UniRef50_P71126 Cluster: ORF1; Method: conceptual translation su...    32   7.9  

>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = -2

Query: 299 LNQV*FFK**NLKKYVHRFAYFIKLYTSMLHEQI*FKFSTMSF---NFSLCFYI*LNKAI 129
           +N +   K  N  KY +   +FIK Y + L+    FK++   +   N     YI  N  I
Sbjct: 565 INNIIIKKYLNFYKYTYNKLFFIKKYNNFLYLYEIFKYNWYKYLLLNNKYNLYIIYNNYI 624

Query: 128 *TVYTCNVNYPCFCFNXVFY 69
             +Y  N+N   +    +FY
Sbjct: 625 KYLYKYNININLYFIKNLFY 644


>UniRef50_P71126 Cluster: ORF1; Method: conceptual translation
           supplied by author; n=15; Campylobacter|Rep: ORF1;
           Method: conceptual translation supplied by author -
           Campylobacter jejuni
          Length = 518

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 214 CCTNKSSLNLAQCHLIFPYAFIFD*TKPFERYTLVMLTTRVFVLIXYFTF 65
           CC + +S+N ++  L F Y F F  T    ++ +++   +  +L+ +F F
Sbjct: 5   CCIDNNSINCSKAFLNFIYDFTFKITLEKVKFYIILRCCKFHLLVNFFHF 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,173,081
Number of Sequences: 1657284
Number of extensions: 5168837
Number of successful extensions: 10010
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10005
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)