Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0358.Seq
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   2.0  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    27   2.0  

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 226 YIRRCCTNKSSLNLAQCHLIFPYAFIFD*TKPFERYTLVMLTTRVFVL 83
           Y+ RC   +  ++ A+ HL+F +    D     +R +L+ LTT + +L
Sbjct: 229 YLGRCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLLIL 276


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 45  SNTFFYWKVKYXIKTKTRVVNITSVY 122
           ++T+FYW  K    T T +  IT+ Y
Sbjct: 102 TDTYFYWFTKMTAMTGTEMAQITTPY 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,418
Number of Sequences: 5004
Number of extensions: 24535
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)