Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0358.Seq
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0111 - 20217128-20217198,20217648-20217770,20217924-202186...    31   0.50 
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942...    27   6.1  
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380...    27   8.1  

>11_06_0111 -
           20217128-20217198,20217648-20217770,20217924-20218637,
           20218874-20218915,20219025-20219820
          Length = 581

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +2

Query: 194 TRFVRATSTYII**NKQNGVRIFLDFIT*KIKLGSVLSTACRRGCRTTAGSCYGRTXASC 373
           T + ++   Y    NK  GV + LD +            A    C+ T  SC  R   S 
Sbjct: 186 TSYAKSMELYSKYRNKGTGVPLVLDLVVGNETCDEAKRNALSYACKATNSSCIDRPSRSG 245

Query: 374 RCCGCS 391
             C CS
Sbjct: 246 YLCNCS 251


>01_06_0582 +
           30392297-30392677,30393786-30394039,30394175-30394298,
           30394484-30394588,30395913-30396035
          Length = 328

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 281 KIKLGSVLSTACRRGCRTTAGSCYGRTXASCRC 379
           KIK    L  A +RG R   GS  G + A C C
Sbjct: 135 KIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVC 167


>11_06_0334 +
           22437187-22437322,22437430-22437515,22437927-22438073,
           22438166-22438274,22439510-22439633,22439727-22439752,
           22439774-22440000,22440084-22440185
          Length = 318

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 308 TACRRGCRTTAGSCYG 355
           T C  GC TTAG C G
Sbjct: 212 TTCFEGCATTAGECGG 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,648,641
Number of Sequences: 37544
Number of extensions: 126780
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)