Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0358.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                 32   0.22 
SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)            27   8.3  

>SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 338

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
 Frame = -2

Query: 248 RFAYFIKLYTSMLHEQI*FKFSTMSFNFSLCFYI*LNKAI*TVYTCNVNY-PCFCFNXVF 72
           R A+  +L ++ LHE++ +K   +S    L FY+  +     V  C +N  P  C N  F
Sbjct: 242 RRAWMRRLTSNSLHERVNYKVFKISLAIVLAFYLCYSCYWLQVTLCTLNEPPRLCANQTF 301

Query: 71  -----YFPIKKCVA--VICGSFNKR 18
                Y  I  C    ++C +F+ R
Sbjct: 302 RFMNVYLAIANCAVNPIVCLAFSSR 326


>SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)
          Length = 233

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +2

Query: 293 GSVLSTACRRGCRTTAGSCYGRTXASCRCCGCSW 394
           G +   AC   C    G C+G T   C  C   W
Sbjct: 61  GKMSCKACHESC---FGGCHGGTAKDCSACKSGW 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,565,389
Number of Sequences: 59808
Number of extensions: 165939
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)